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207 protocols using bca protein assay kit

1

Quantification of EV Release from Cationized Gelatin Hydrogels

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To study the release of EVs from cationized gelatin hydrogels, we employed in vitro degradation of 2.0 mg of the hydrogels. EVs were labelled using a PKH26 red fluorescent cell linker kit (Sigma–Aldrich, St Louis, MO) according to the manufacturer’s instructions. In summary, 100 μg/mL of EVs was impregnated into a gelatin hydrogel sheet (low, middle, and high cross-linked) at a volume of 20 μl per sheet overnight at 4 °C. Hydrogel containing EVs was placed in a 1.5 mL tube, and 600 μl of PBS was added and incubated at 37 °C for 26 h. After addition of collagenase D (Roche Diagnostics, Basel, Switzerland), the gels were incubated at 37 °C. At indicated time points (0, 1, 3, 5, 8, 12 and 24 h), the degradation of hydrogel was determined by BCA protein assay kits (Takara Bio, Shiga, Japan), and the amount of released PKH26-labelled EVs was calculated by Spectra Max i3x (Molecular Devices, San Jose, CA).
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2

Synthesis and Characterization of Biomagnetic Constructs

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Ferrous chloride tetrahydrate (FeCl2·4H2O; purity 99%), ferric chloride hexahydrate (FeCl3·6H2O; purity 99%), methanol (Purity 98%), sodium hydroxide (NaOH; 98%), thioglycolic acid (TGA; 98%), and nickel chloride (NiCl2·4H2O; purity 99%) were obtained from Merck corporation. Uric acid, boric acid, and pyromellitic acid (1,2,4,5-benzene tetracarboxylic acid, H4BTEC; 98%) were procured from the Sigma-Aldrich Company, Darmstadt, Germany. In experimental performance, 0.4 T (Tesla) neodymium magnets were used. Isopropyl β-d-1-thiogalactopyranoside (IPTG) and kanamycin were purchased from BioBasic Inc., Markham, ON, Canada. BCA protein assay kits were secured from Takara, Shiga, Japan. Nitrilotriacetic (Ni-NTA) chromatography columns were acquired from Invitrogen, while the pET28a(+) vector was from Novagene, Madison, WI, USA. All other analytic grade chemicals and were bought from Merck (Kenilworth, NJ, USA).
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3

Western Blot Analysis of HIF-1α

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Tumor tissues were lysed with RIPA lysis buffer (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Protein concentrations were measured using BCA protein assay kits (Takara). Proteins were electrophoretically separated on 7.5% SDS‐PAGE gels. Forty micrograms of protein were loaded per lane. Proteins were then transferred to PVDF membranes, and Western blotting carried out to detect HIF‐1α. Anti‐HIF‐1α mouse monoclonal IgG2b (1:500, NB100‐105; Novus Biologicals, Littleton, CO, USA) was used as the primary antibody. Anti‐mouse IgG‐HRP (1:1000; Jackson ImmunoResearch Laboratories, West Grove, PA, USA) was used as the secondary antibody. Horseradish peroxidase was detected with the ECL system (Amersham Biosciences, GE Healthcare, Diegem, Belgium) using an imaging densitometer LAS‐3000 mini system (Fujifilm, Kanagawa, Japan).
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4

Quantitative Analysis of HIF-1α and AGR2 in Tumor Tissues

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RIPA lysis buffer (Beyotime Institute of Biotechnology, Haimen, China) was used to lyse the tumor tissues. BCA protein Assay kits (Takara Biotechnology Co., Ltd., Dalian, China) were used to detect protein concentrations. Proteins (40 µg/lane) were separated via 12% SDS-PAGE and transferred onto polyvinylidene difluoride membranes. A western-blot assay was conducted for the detection of HIF-1α and AGR2, using a HIF-1α antibody (1:100; 20960-1-AP; ProteinTech Group, Inc.) and an anti-AGR2 antibody (1:500; EPR20164-278; Abcam) as the primary antibody overnight at 4°C. The internal control protein was used to detect the protein concentrations, along with a pro-β-actin antibody (1:1,000; ab8226; Abcam). Detection was performed using an enhanced chemiluminescent kit (20148; GE Healthcare Life Sciences). An enhanced chemiluminescence detection system (ChemiDoc XRS; Bio-Rad Laboratories, Inc., Hercules, CA, USA) and Quantity One software (version 4.62; Bio-Rad Laboratories, Inc.) were used to visualize and quantify the resultant bands.
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5

Tumor and Endothelial Cell Protein Analysis

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Tumors were harvested. Radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, Shanghai, China) was used to lyse tumor tissue. Bicinchoninic acid (BCA) protein assay kits (TaKaRa, Dalian, China) were used to detect protein concentrations. Western-blotting assay was conducted for detection of HIF-1α and AGR2 by using HIF-1α antibody (1:100; Proteintech, Chicago, USA) and anti-AGR2 antibody (1:500; Abcam, Cambridge, UK) as primary antibody. Well-grown HUVECs were cultured with 1 µg AGR2. Then HUVECs were treated with rhES (100 µg), AuNPs (100 µg), rhES-AuNPs (100 µg), and saline (5 mM) for 24 h, respectively. Lysates of HUVECs were collected and applied for detection of MMP2, cMyc, VE-cadherin (VE-ca), and phosphorylation of p38 and ERK1/2, by using rabbit monoclonal p44/p42 (ERK1/2) antibody, rabbit monoclonal phos-phop44/42 (ERK1/2) antibody, rabbit monoclonal p38 antibody, mouse monoclonal phosphop38 (Thr180/Tyr182) antibody, and rabbit polyclonal anti-β-actin antibody (Cell Signaling, Boston, USA). The internal control protein was β-actin. It was detected by anti-beta actin antibody (1:1000; Abcam, Cambridge, UK). Detection was performed with the ECL kit (GE Healthcare, Pittsburgh, USA).
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6

Western Blot Analysis of EMT Markers

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After the protein extraction and quantification by the Radio Immunoprecipitation Assay (RIPA) lysis buffer (KeyGen, Nanjing, China) and BCA Protein Assay Kit (Takara) respectively, the mixture of proteins (40 µg per sample) and loading buffer (Takara) was loaded on 10% sodium dodecyl sulfate polyacrylamide gel to conduct the electrophoresis for 2 h. Then, the separated proteins on the gel were transferred onto the polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA) and blocked using 5% non-fat milk (Beyotime). Afterwards, the membranes were incubated with primary antibodies at 4°C overnight and secondary antibody for 1 h at indoor temperature, followed by the detection of the SignalFire™ Plus ECL Reagent (Cell Signaling Technology (CST), Boston, MA, USA). The protein bands were observed by ImageLab software version 4.1 (Bio-Rad Laboratories, Hercules, CA, USA) and the signal levels were analyzed as described earlier.23 (link) The antibodies used in this report were listed as follows: anti-E-cadherin (CST, #3195, 1:1000), anti-N-cadherin (CST, #4061, 1:1000), anti-Vimentin (CST, #5741, 1:1000), anti-KLK4 (Abcam, Cambridge, UK, ab181402, 1:1000), internal control anti-β-actin (CST, #4970, 1:1000), and goat anti-rabbit IgG/HRP-linked secondary antibody (CST, #7074, 1:3000).
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7

Western Blot Analysis of Bcl-2 and Survivin

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The protein levels were determined by the western blotting assay. Total protein lysis was prepared using the RIPA Lysis Buffer (P0013B, Beyotime) and quantified by the BCA Protein Assay Kit (T9300A, Takara). The protein samples for western blotting were prepared using SDS-PAGE Sample Loading Buffer (P0015L, Beyotime). Equal amounts of total proteins were loaded onto 10% SDS-PAGE (P0012AC, Beyotime) and separated by electrophoresis. The separated proteins were transferred onto a PVDF membrane (IPVH00010, Millipore, Shanghai, China) and blocked by 5% skim milk (232100, BD Bioscience, San Jose, CA, USA). The membranes were incubated with primary antibodies Bcl-2 Rabbit Polyclonal Antibody (1:1000, AF0060, Beyotime), Anti-Survivin Rabbit pAb (1:1000, GB11177, Servicebio, Wuhan, China) and GAPDH Mouse Monoclonal antibody (1:5000, 60004-1-Ig, Proteintech, Wuhan, China) at 4 °C overnight. Then HRP-conjugated Affinipure Goat Anti-Mouse IgG (1:5000, SA00001-1, Proteintech) and HRP-conjugated Affinipure Goat Anti-Rabbit IgG (1:5000, SA00001-2, Proteintech) were used to probe the membrane at room temperature for 1 h. The protein bands were visualized using Amersham ECL Prime Western Blotting Detection Reagent (RPN2232, GE Healthcare, Princeton, NJ, USA) and imaged by Tanon-5200 chemiluminescence detection system (Tanon).
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8

Quantifying Fibrin Degradation Kinetics

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A-PRF/CGF/PPTF clots (1 mm thick) were compressed in the stainless-steel compressor [16 (link)] and were punched out (φ8 mm) using a biopsy punch (Kai Corp., Tokyo, Japan). After repeatedly rinsing the disks with PBS to eliminate as much serum as possible, the disks were immersed into 4 mL of 0.05% trypsin plus 0.53 mM EDTA (Invitrogen, Carlsbad, CA, USA) in a 35-mm dish inside a CO2 incubator. Fibrin is well known to be specifically degraded by plasmin in vivo; however, because it takes a long time to determine degradation using plasmin in vitro [12 (link)] and because fibrin could be degraded also by other proteases in vivo, we used trypsin plus EDTA, which is usually used in cell culture, in this study.
After pipetting the digestion solution, 50 μL of the digestion solution was collected every 20 min and was stored at −20 °C until protein measurement. Protein levels, which can be considered primarily as levels of digested fibrin fiber, were then determined by a BCA protein assay kit (Takara Bio, Kusatsu, Japan). The protein levels at the time point when the initial fibrin disks were completely digested overnight were evaluated at 100%.
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9

Western Blot Protein Quantification

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Total proteins were extracted from cells using ice‐cold Radio Immunoprecipitation Assay (RIPA) lysis buffer containing protease inhibitors. BCA Protein Assay Kit (Takara) was used to quantify protein concentration. Approximately 20 μg of total protein lysate was separated by 10% SDS‐polyacrylamide gel and transferred to nitrocellulose membrane. Membranes were blocked with 5% skimmed milk for 2 hours and then incubated overnight with primary antibodies. After three rinses, membranes were incubated with horseradish peroxidase‐conjugated secondary antibodies at room temperature for 1 hour. Signals were visualized with Enhanced Chemiluminescence Detection Kit (Pierce Biotechnology).
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10

Collagen and Actin Protein Analysis

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Cells were lysed in RIPA lysis buffer (Beyotime, China), and the total protein concentrations were detected using the BCA Protein Assay Kit (TaKaRa, Japan). The proteins were separated by 10% SDS-PAGE and then transferred to PVDF membranes. All membranes were blocked with 5% BSA. The membranes were incubated with a rabbit polyclonal anti-human collagen type I antibody (ab34710; Abcam, dilution 1 : 4000), a rabbit polyclonal anti-human collagen type III antibody (ab7778; Abcam, dilution 1 : 4000), an anti-alpha muscle actin antibody (ab5694; Abcam, dilution 1 : 1000), or β-actin (BS13278, Bioworld, dilution 1 : 1500) at 4°C overnight. Subsequently, each membrane was incubated with the corresponding secondary antibodies at room temperature for 1 h. Finally, we used the enhanced chemiluminescence kit to observe protein bands in a ChemiDoc XRS Plus c (Bio-Rad, USA).
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