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55 protocols using ccnd1

1

Western Blot Analysis of Protein Targets

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Western analysis was performed as described previously (15 (link), 16 (link)). Target proteins were detected by using specific antibodies against BPTF (A300-973A at 1:1000 dilution) (Bethyl Laboratories, Montgomery, TX), pAKT (Ser473, #9271 at 1:500 dilution), total AKT (#4685, at 1:500 dilution), pGSK-3β (Ser9, #9323 at 1:500 dilution), CCND1 (#2978 at 1:500), BCL2 (#15071 at 1:500) (Cell Signaling Technology, Danvers, MA) and GAPDH (AB2302 at 1:10000 dilution, EMD Millipore, Billerica, MA).
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2

Rhein Modulates Signaling Pathways in Renal Cancer Cells

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Cell lysates were harvested from A498 and 786-O cells with or without treatment of different dose of Rhein by RIPA buffer (Beyotime). Protein lysates were dissolved in 2× loading buffer and boiled for 15 min at 100°C. After that protein lysates were resolved on 11% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels and transferred to nitrocellulose membrane. Resultant blots were blocked with 5% skim milk and reacted with properly diluted primary antibodies against glyceraldehyde 3-phosphate dehydrogenase (Santa Cruz), phospho-extracellular signal-regulated kinase (Santa Cruz), total extracellular signal-regulated kinase (Santa Cruz), p-AKT (Cell Signaling Technology), phospho-c-Jun N-terminal kinase (Cell Signaling Technology), matrix metalloproteinase 9 (MMP9) (Cell Signaling Technology) and CCND1 (Cell Signaling Technology) for 1 h at room temperature. Immune complexes were detected by horseradish peroxidase-conjugated secondary antibodies, followed by enhanced chemiluminescence reaction (Amersham Pharmacia Biotech).
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3

Western Blot Analysis of CCND1 Protein

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Samples were lysed in 50 mM Tris-HCl (Sigma Aldrich, St. Louis, MO, USA, Cat# T2663), pH 7.4, 1% NP-40 (Sigma Aldrich, Cat# I8896), 150 mM NaCl (Sigma Aldrich, Cat# S5886), 1 mM EDTA (Promega, Madison, WI, USA, Cat# V4231), 1% glycerol (Sigma Aldrich, Cat# G5516), 100 μM vanadate (Sigma Aldrich, Cat# S6508), protease inhibitor cocktail (Roche Diagnostics, Basel, Switzerland, Cat# 004693159001), and PhosSTOP (Roche Diagnostics, Cat# 04906837001). Lysates were subjected to SDS-PAGE and transferred to PVDF membranes. The proteins were detected by western blot analysis by using an enhanced chemiluminescence system (Western Lightning–ECL, PerkinElmer, Waltham, MA, USA, Cat# NEL103001EA). Antibodies used were specific for CCND1 1:1000 (Cell Signaling, Danvers, MA, USA, Cat# 2926), and GAPDH 1:5000 (Abcam, Cambridge, UK, Cat# ab9485). All western blot quantifications were performed using ImageJ72 (link).
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4

Western Blot Analysis of Cell Signaling Proteins

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The cultured cells were harvested and lysed with cell lysis buffer containing protease inhibitors. Total protein extract was separated through 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to prewetted polyvinylidene difluoride membranes (Millipore, Billerica, MA). The membranes were then blocked in 5% fat-free milk for 1 hour and probed with antibodies against CCND1 (Cell Signaling, Boston, MA), USP28 (Sigma-Aldrich, St. Louis, MO), and β-actin (Sigma-Aldrich) overnight at 4°C. After washing, the blots were incubated with the horseradish peroxidase–conjugated secondary antibody (Abcam, Cambridge, UK). Signal was visualized with enhanced chemiluminescence detection kit (Thermo scientific, Rockford, IL).
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5

Protein Extraction and Western Blot Analysis

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Proteins were extracted from cell lysis with the Radio Immunoprecipitation Assay (RIPA) buffer (Thermo Scientific, Carlsbad, California, USA) containing a protease inhibitor cocktail (Selleck, Huston, Texas, USA). BCA kit (Thermo Scientific, Carlsbad, California, USA) was used to quantify proteins and equal amounts was resolved by sodium dodecyl sulfate polyacrylamide (SDS-PAGE) gel and transferred to the PVDF membrane (Millipore, Billerica, MA). The membranes were blocked for 2h with 5% skim milk at room temperature and incubated with primary antibodies at 4°C overnight with gentle shake. The PVDF membrane was then incubated with appropriate secondary antibody for 1 h at room temperature. The bands in the membranes were then detected using the enhanced chemo luminescence substrate kit (Thermo Scientific, Carlsbad, California, USA) and scanned with Image J software. The antibodies used in our study including MMP9, CCND1, XIAP, TWIST1, IκBα, p-IκBα, p-IKKα/β, IKKα, IKKβ, N-Cadherin, E-Cadherin, Vimentin, Lamin B1 and GAPDH are purchased from Cell Signaling (CST, Danvers, MA, USA).
Subcellular fractions were prepared from ESCC cells with a Minute™ Cytoplasmic & Nuclear Extraction Kits (Invent biotech, Eden Prairie, USA) according to manufacturer’s instructions.
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6

Western Blot Analysis of Protein Signaling

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Samples were lysed in RIPA buffer (Beyotime, Shanghai, China) containing protease inhibitor cocktail, phosphatase inhibitors and phenylmethylsulfonyl fluoride (PMSF). Equal amounts of protein (30–50 μg) were loaded and separated on a 10% SDS-polyacrylamide gel, electrotransferred onto PVDF membranes (Millipore, Billerica, MA, USA), and blocked in 5% bovine serum albumin in Tris-buffered saline containing Tween 20 for 1 h at room temperature. The membranes were probed with primary antibodies against p-AKT (S473), AKT, CCND1, CCNA2, CLND1, CDH1 (Cell Signaling Technology, MA, USA), HSP90 (Proteintech, IL, USA) and SULT2B1 (R&D systems, MN, USA) overnight at 4 °C. After three 10 min washes with Tris-buffered saline with Tween-20 (TBST), the membrane was incubated at room temperature for 1 h with an appropriate secondary antibody conjugated to horseradish peroxidase. HSP90 was used as the loading control. The protein signals were visualized with a Pierce ECL Western Blotting kit (Life Technologies, Thermo Fisher Scientific, USA).
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7

Protein Expression Analysis by Western Blot

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Tissue and cellular proteins were extracted with radioimmunoprecipitation assay buffer (Beyotime, Jiangsu, China) mixed with phenyl-methylsulfonyl fluoride (PMSF), and quantified with BCA protein assay kit (Beyotime, Jiangsu, China). Equal amount of proteins were loaded and analyzed by 10% SDS-PAGE gels. The isolated proteins were transferred to PVDF membranes (Bio-Rad, CA, USA). After blocking with 5% fat-free milk, the membranes were incubated with primary antibodies against MYC (1:1000), FUBP1 (1:1000), FIR (1:1000), nm23-H1(1:1000), MMP2 (1:1000), MMP9 (1:1000), CDK4 (1:1000), CCND2 (1:1000), CCND1 (1:1000), CCNE1 (1:1000), Bcl-2 (1:1000), Bax (1:1000) and cleaved Caspase-3 (1:1000) (Cell Signaling Technology, Beverly, MA, USA) overnight at 4 °C. The membranes were washed by TBST, and then incubated with goat anti-rabbit secondary antibodies (Thermo Fisher Scientific, USA) for 2 h. Finally, the bands were illuminated with Pierce ECL (Thermo Fisher Scientific, USA).
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8

Western Blot Analysis of Cell Signaling

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Total protein was extracted and separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred onto 0.45 μm PVDF membrane (Millipore). The following primary antibodies were used in the immunoblotting assays: antibodies for Smad7 (sc-101152; Santa Cruz Biotechnology, Santa Cruz, CA, USA), vimentin (no. 3390; Cell Signaling Technology, Danvers, MA, USA), β-actin (no. 3700; Cell Signaling Technology), CCND1 (no. 2926; Cell Signaling Technology), c-myc (ab17356; Abcam, Cambridge, MA, USA), Slug (no. 9585; Cell Signaling Technology), P21 (sc-6246; Santa Cruz), P27 (no. 3688; Cell Signaling Technology) and β-catenin (no. 8480; Cell Signaling Technology).
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9

Carvacrol's Effects on Cancer Markers

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Cell culture reagents were obtained from Gibco-Invitrogen (Thermo Fisher Scientific, Waltham, MA, USA). Carvacrol was purchased from Sigma-Aldrich Co. (St Louis, MO, USA). P21, CDK2, CDK4, CDK6, CCND1, Cox2, Bcl-2, Bax, FAK, p-FAK, ZEB1, and β-catenin were purchased from Cell Signaling Technology (Danvers, MA, USA). β-actin was purchased from Beijing Zhongshan Goldenbridge Biotechnology (Beijing, People’s Republic of China) and GAPDH was purchased from ShangHai Kangchen (Shanghai, People’s Republic of China). MMP-2 and MMP-9 were purchased from Santa Cruz Biotechnology Inc. (Dallas, TX, USA).
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10

Western Blot Analysis of Cell Cycle Regulators

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At 72 h after transfection, aliquots of 5 × 106 cells were lysed in RIPA buffer (Beyotime Institute of Biotechnology, China), and the lysate was determined using a BCA Protein Assay Kit (Beyotime, Shanghai, China). A total of 30 μg protein per lane was resolved by 10% SDS-PAGE and transferred to a PVDF membrane (Merck Millipore, USA). The membrane was blocked with 5% non-fat milk and then incubated overnight with primary antibodies against β-actin (Sigma-Aldrich, St. Louis, Missouri, USA), CDK-4 (Cell Signaling Technology, USA), CCND1 (Cell Signaling Technology, USA), or CCND2 (Cell Signaling Technology, USA). The membrane was washed in TBST and incubated with the secondary goat anti-mouse IgG antibody (Beyotime Institute of Biotechnology, Shanghai, China). An enhanced chemiluminescence kit (Pierce, Rockford, IL, USA) was used to detect the protein bands using a FluorChem E System (ProteinSimple, CA, USA).
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