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83 protocols using anti mouse cd16 cd32

1

Quantifying Antigen-Specific CD8+ T Cells

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To obtain streptavidin-PE-conjugated tetramer, biotinylated Dd/NP166–174 monomeric protein was purified and tetramerized at an 8:1 molar ratio with streptavidin-PE (Invitrogen, San Diego, CA, USA) according to the manufacturer's protocol. At day 10 post challenge, each group of mice was sacrificed and tracheotomy was performed. The lungs were perfused with 5 mL of PBS with 10 U/mL heparin (Sigma) using a syringe with a 25-gauge needle. The lung tissues were homogenized with 3 mL of Iscove's Modified Dulbecco's Medium (IMDM) through 70-µm cell strainers to obtain single-cell suspensions. Centrifugation was conducted afterward, lymphocytes were resuspended in fresh IMDM and washed with fluorescence-activated cell sorting (FACS) buffer (0.5% FBS and 0.09% NaN_3 in PBS). After blocking with anti-mouse CD16/CD32 (BD Biosciences, Franklin Lakes, NJ, USA), cells were stained with anti-CD8a APC (clone 53-6.7, Biolegend, San Diego, CA, USA), anti-CD44 FITC (clone IM7, Biolegend), and Dd/NP(I) tetramer-PE or Dd/NP(V) tetramer-PE. After staining, the cells were washed and fixed with FACS lysing solution for 15 minutes at RT in the dark. Cells were washed with FACS buffer twice and stored at 4℃ in the dark until FACS analysis.
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2

Immune Cell Profiling by Flow Cytometry

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Cells were stained and analyzed by flow cytometry as previously described (Baxter and Griffin, 2016 (link)). Briefly, 106 live cells were stained with violet LIVE/DEAD Fixable Dead Cell Stain (Life Technologies) for 30 min, anti-mouse CD16/CD32 (BD Pharmingen) for 15 min, and monoclonal antibodies against CD45 (clone 30-F11), CD3 (clone 17A2), CD4 (clone RM4-5), CD8a (clone 53-6.7), and CD19 (clone 1D3) from Ebioscience or BD Pharmingen for 30 min. Cells were run on a BD FACSCanto II cytometer using BD FACSDiva software, version 8, and analyses were carried out using FlowJo software, version 8. Cells were characterized as follows: CD4 T cells (CD45hiCD3+CD4+), CD8 T cells (CD45hiCD3+CD8+), and B cells (CD45hiCD3-CD19+). For CLN and brain, total mononuclear cell counts were from three independent experiments, and for spinal cord, as well as CD4+, CD8+ and CD19+ cells for all tissues, counts were from two independent experiments. At 11 DPI, the SINV, 0.6 mg/kg DON group had data from one fewer experiment than the others (one to two independent experiments).
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3

Mature Megakaryocyte Generation Protocol

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Bone marrow-derived mature megakaryocytes were generated as described [25 (link)]. Briefly, mouse femurs were flushed, and cells expressing Ly6G/Ly6C, CD11b, CD16/32, and B220 were depleted using magnetic beads (sheep anti-rat IgG Dynabeads, Thermo Fisher Scientific, Waltham, MA, USA) and the following antibodies: anti-mouse Ly6G/Ly6C (561103, BD Biosciences, Franklin Lakes, NJ, USA), anti-mouse CD11b (47-0112-82, Thermo Fisher Scientific), anti-mouse CD16/CD32 (553141, BD Biosciences), and anti-mouse B220 (BD Biosciences). Negatively selected cells were incubated in megakaryocyte medium (Stempro-34 SFM, Thermo Fisher Scientific) containing 2.6% nutrient supplement, 1% glutamine, 1% penicillin–streptomycin–fungizone, and 20 ng/mL stem cell factor (Peprotech EC Ltd., London, UK) for 2 d at 37 °C and 5% CO2, followed by a 5-d incubation with additional 50 ng/mL thrombopoietin (TPO) (Peprotech EC Ltd.). Mature megakaryocytes were enriched with a gradient of 3%/1.5% BSA (PAA Laboratories, Fisher Scientific, Hampton, NH, USA) under gravity for 45 min at RT. Cells in the lower 25% of the gradient, representing mature megakaryocytes, were washed in PBS and harvested in TriFast™ (VWR, Radnor, PA, USA).
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4

Live/Dead Cell Discrimination by Flow Cytometry

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For live cell/dead cell discrimination, Zombie Aqua dye (BD Biosciences, San Jose, CA) was used according to manufacturer's protocol. Isolated MDLN cells were first blocked with 1% mouse IgG (Sigma-Aldrich) and 1% anti-mouse CD16/CD32 (BD Biosciences), then stained with anti-mouse MHCII-Alexa Fluor 627 (clone M5/114.15.2; BD Biosciences) and anti-mouse CD11c-allophycocyanin-Cy7 (clone N418; BD Biosciences), according to the manufacturer's protocol. Analyses were performed on a FACSCanto flow cytometer (BD Biosciences), and data were analyzed with the FlowJo 7.5.
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5

Immune Cell Phenotyping by Flow Cytometry

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After isolation, remaining cells were incubated with anti-mouse CD16/CD32 (1:50, BD Pharmingen #553142) to block endogenous Fc for 10 min on ice. After this, cells were stained with antibodies including CD45-EF450 (1:2000, eBioscience #48–0451–82) and CD31-APC (1:100, eBioscience #17–0311–82) for 45 min at 4 °C. After washing, the cells were resuspended in 500 μl buffer and analyzed on an LSRFortessa (BD Pharmingen) cell analyzer. Obtained data were analyzed by Summit software (Beckman Coulter).
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6

Immunophenotyping of Spleen and B Cells

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Spleen cell suspensions or cultured B cells were stained on ice in PBS/0.5% BSA with specific antibodies listed in Table S5. Anti–mouse CD16-CD32 (BD) was used to block FcγIII/II receptors before staining for NP-binding cells. The cells were washed and analyzed on a FACSCalibur or an LSRII (BD). Data were analyzed using FlowJo software.
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7

Aortic Single Cell Isolation and Flow Cytometry

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Single cell suspensions were prepared from aortas as previously described.3 (link), 20 (link) Briefly, the entire aorta with surrounding perivascular fat was minced with fine scissors and digested with 1 mg/mL collagenase A, 1 mg/ml collagenase B, and 100 µg/ml DNase I in phenol-free RPMI 1640 medium with 5% FBS for 30 min at 37°C, with intermittent agitation. Fc receptors were blocked with anti-mouse CD16/CD32 for 20 min at 4°C (BD Biosciences, clone 2.4G2) prior to the staining of surface markers. The antibodies used were: PerCP-Cy5 anti-CD45; PE anti-CD34; APC anti-CD34, APC-Cy7 anti-Sca-1/Ly-6A; PE-Cy7 anti-c-kit/CD117; Amcyan anti-CD31. All aortic cells were incubated with 1.5 µl of each antibody in 100 µl of FACS buffer for 35 minutes. The cells were then washed twice with FACS buffer and immediately analyzed on a FACSCanto flow cytometer with DIVA software (Becton Dickinson). Dead cells were excluded from analysis with a fixable Violet dead cell stain. Intracellular staining was then performed with the Cytofix/Cytoperm™ Plus fixation/permeabilization solution kit (BD Biosciences) using a mouse monoclonal antibody (Abcam) conjugated to Alexa Fluor 488 or 647 (Molecular Probes). For each experiment, we performed flow minus one (FMO) controls for each fluorophore to establish gates. Data analysis was performed using FlowJo software (Tree Star, Inc.).
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8

Comprehensive Immune Cell Profiling

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Murine primary cells were separated from the spleen, bone marrow, LNs, lamina propria, and subcutaneous tumor tissues and maintained as single-cell suspensions in MACS buffer. Single-cell suspensions were preincubated with anti–mouse CD16/CD32 (BD Biosciences) on ice for 30 minutes to block FcγRs, and then cells were stained with specific fluorescent dye–conjugated cell surface marker antibodies. Cells were also stained with either propidium iodide (PI) or DAPI to exclude the dead cells. After washing, cells were resuspended in MACS buffer and analyzed using either a BD LSRII or BD Symphony A5. Cell sorting was performed with the BD FACSAria III. All data were further processed with FlowJo (v10) software (TreeStar). For IgG2c+ plasma cell staining, primary cells were first blocked and stained with fluorochrome-conjugated rat anti–mouse B220 and CD138. After washing with MACS buffer, cells were fixed and permeabilized. Subsequently, cells were stained with Alexa Fluor 647–conjugated Fab fragment anti–mouse IgG2c, Fc specific (Jackson ImmunoResearch) on ice for 30 minutes before further FACS processing. The gating strategy for flow cytometry analyses is shown in Supplemental Figure 9.
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9

Osteoclastogenesis Induction Protocol

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Human recombinant RANKL, murine M-CSF (also called CSF-1), IFN-γ, IL-4, GM-CSF, and TNF-α were procured from PeproTech (London, UK). Minimum essential medium (α-MEM), phosphate buffered saline (PBS), penicillin, and streptomycin were purchased from HyClone (Logan, UT, USA). Oligonucleotides and SYBR Green PCR Master Mix were bought from Bioneer (Daejeon, Korea) and Toyobo (Osaka, Japan), respectively. Antibodies against the following antigens were used in this study: HO-1 (Enzo Life Sciences, Farmingdale, NY, USA), Nrf2 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), peroxiredoxin 1 (Prx1) (AbFrontier, Seoul, Korea), and anti-mouse CD16/CD32 (BD Bioscience, San Jose, CA, USA). Horseradish peroxidase-conjugated mouse- and rabbit-IgG antibodies were purchased from BD Pharmingen (San Diego, CA, USA). Other chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA) unless otherwise stated.
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10

Flow Cytometric Analysis of LPS-Cell Interactions

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Flow cytometry was used to detect cell surface receptors and fluorescein isothiocyanate-conjugated LPS (FITC-LPS) associated with intact cells as previously described with minor modifications [40 (link)]. For the detection of cell surface receptors, cells were pretreated with fatty acid as indicated above with or without ultra-pure LPS for stimulation. One million cells were blocked with 1 μg anti-mouse CD16/CD32 (BD Biosciences, San Jose, CA) in 100 μL for 5 min at 4°C and then labeled with 0.25 μg anti-TLR4-APC (R&D Systems), 0.5 μg anti-TLR4/MD2-APC (eBioscience), 0.5 μg anti-CD14-PE (eBioscience), or their isotype controls in 100 μL blocking solution for 30 min at room temperature. To assess the effect of LPS-cell association, fatty acid-treated cells were harvested and suspended in the original culture media containing the treatment fatty acid, and incubated with LPS-FITC (1 μg/mL final concentration) for 1 h at 37°C. Fluorescent labeled cells were washed and resuspended in the staining buffer (R&D Systems), and analyzed on an Accuri Flow Cytometer (BD Biosciences).
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