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76 protocols using atrazine

1

Atrazine Effects on Diabetic Rats

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Animals were divided into four groups with four rats each. Groups I and II were normal (nondiabetic) rats and Groups III and IV were diabetic rats. Group I (normal control rats-NC): animals were given 300 μL of safflower oil, orally; Group II (atrazine treated rats-NA): animals were given atrazine (300 μg kg−1 body weight/rat/day) (Sigma Aldrich, 98.8% purity) dissolved in safflower oil, orally; Group III (diabetic control rats-DC): diabetic animals were given safflower oil, orally; Group IV (atrazine treated diabetic rats-DA): diabetic animals were given atrazine (300 μg kg−1 body weight/rat/day) dissolved in safflower oil, orally. The treatment was continued to all the groups for a period of 15 days.
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2

Atrazine Exposure Protocol for In Vivo and In Vitro Studies

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For animal studies, atrazine (45330; Sigma-Aldrich, Burlington, MA; certified, 98.8% pure) was prepared weekly as a suspension in 1% carboxymethylcellulose (CMC) sodium salt (9004-32-4; Alfa Aesar, Haverhill, MA) and deionized water. Suspensions were stored refrigerated (at 2°C to 8°C) until use. For cell culture studies, atrazine was dissolved in Dimethyl sulfoxide (DMSO; Sigma-Aldrich; 276855) and stored at -20°C until diluted into media. The in vivo dose and in vitro concentration selections were predicated on previous reports from our laboratories and others that reported repeatable and robust elevations in stress hormones after oral gavage of atrazine. The in vivo no effect level for the atrazine-induced activation of the HPA axis is 5 mg/kg in male rats (13 (link)), and the lowest observed effect level reported for female rats is 12.5 mg/kg (16 (link)). However, to characterize the effects of atrazine on adrenal morphology and activation, doses at the higher end of the known effective range to elicit a rise in stress hormone concentrations were used (11 (link)).
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3

Comprehensive Chemical Sourcing Protocol

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Cypermethrin (Lot# BCCB1117), diethyl phthalate (Lot #BCBZ8989), vinclozolin (Lot #BCBZ5052), 17α-ethinylestradiol (Lot #WXBC9894V), perfluorooctanesulfonic acid (#0000091932), atrazine (Lot# BCBZ3835) were obtained from Sigma-Aldrich INC. P.O. (St. Louis, MO, 63178, USA). Unless otherwise stated, all compounds were purchased from Sigma-Aldrich. All solutions used for in vivo infusions were prepared using nonpyrogenic saline (0.9% NaCl; Baxter Healthcare Ltd., Thetford, Norfolk, UK).
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4

MTT Cytotoxicity Assay Protocol

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3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS), and penicillin-streptomycin were purchased from Invitrogen (Barcelona, Spain). Atrazine (99% purity), glucose-free DMEM media, dimethyl sulfoxide (DMSO), sodium azide, and hydrogen peroxide were purchased from Sigma (USA). hydrogen peroxide and sodium azide were used as a positive control for cell viability assay and mitochondrial toxicity assay, respectively.
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5

Magnetically Separated Multi-walled CNTs

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Multi-walled CNT samples were purchased from Wako pure chemicals, Japan (CNT-Wako: diameter, 3–20 nm; length, ∼10 μm), and from Chengdu Alpha Nano Technology Co., Chinese Academy of Sciences, China (CNT-Alpha: diameter, 30–50 nm; length, ∼20 μm). In this article, the raw materials (i.e., as-purchased CNTs) are abbreviated as CNT-Wako and CNT-Alpha, and the magnetically separated samples are denoted MCNT-Wako and MCNT-Alpha. Ethanol (Sigma-Aldrich Co., Denmark) was used in the solvation/separation step of MCNTs. A stock solution of atrazine (500 mg/L) was prepared by dissolving 50 mg of standard atrazine powder (Sigma-Aldrich Co., Japan) in 100 mL of LC/MS grade mEthanol (Sigma-Aldrich Co., Japan) and kept refrigerated (4°C). Standard solutions were prepared by diluting the stock solution in appropriate amounts of Milli-Q water.
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6

Comprehensive Chemical Analysis Protocol

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Phosphate buffer saline with potassium chloride (10 mm) tablets at pH 7.4, glutaraldehyde (25%), flavin adenine dinucleotide, sodium chloride, perchloric acid (70%), chloroplatinic acid (8%), glyphosate, atrazine, aminomethylphosphonic acid, thiamethoxam, imidacloprid, clothianidin, paraoxon‐methyl, parathion‐methyl, malathion and chlorpyrifos were purchased from Sigma Aldrich. 2,4‐dichlorophenoxyacetic acid was purchased from Tokyo Chemical Industry, and dicamba was provided by the Iowa State University chem service. The glycine oxidase gene originates from Bacillus subtilis and gives rise to a 47 kDa protein.[84, 92] Glycine oxidase (40 µm) was prepared by the U.S. Naval Research Laboratory in a manner similar to that described in references.[93, 94]glutaraldehyde dilutions were prepared in PBS pH 7.4. flavin adenine dinucleotide dilutions were prepared in PBS in a pH range from 5.4–9.4. All pesticides were prepared in 10× PBS pH 7.4. Kapton polyimide substrate (0.125 µm thick) was purchased from McMaster‐Carr. River water samples were gathered from the South Skunk River in Iowa. Crop residues were tested on crops purchased from a local grocery market.
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7

Analytical Characterization of Nanomaterials

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Metsulfuron-methyl, melamine, atrazine, and hexazinone were obtained from Sigma-Aldrich (St Louis, MO, USA). NaCl, MgCl2, glucose, L-cysteine, and vitamin C were purchased from Aladdin Industrial Corporation (Shanghai, China). Chloroauric acid (HAuCl4) was purchased from Sinopharm Chemical Reagent Co. Ltd. (Shanghai, China). All other reagents were analytical reagent grade.
A NanoDrop oneC spectrophotometer (Thermo Scientific, Waltham, MA, USA) was used to record UV-vis absorption spectra. A JEM-200CX transmission electron microscope (TEM, JEOL, Tokyo, Japan) was used for imaging particle aggregation. Vibrational spectra were obtained with a Fourier transform infrared spectrometer (FT-IR-8400, Shimadzu, Kyoto, Japan).
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8

Photocurrent Inhibition Assay for Herbicides

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For single measurements at high concentrations of herbicide or inhibitor, the photocurrent from a freshly prepared cell was measured for a standard period of 30 s, as described above, and then 2 µL of 50 mM atrazine, terbutryn or stigmatellin, or 10 µl of 50 mM bentazon, bromoxynil, DCMU or capsaicin dissolved in ethanol was added. The cell was incubated for 1 min before measurement of a 30 s photocurrent. All herbicides and inhibitors were purchased from Sigma-Aldrich, and their structures are shown in Supplementary Fig. 2.
For titrations, the photocurrent from a freshly prepared cell was measured for 30 s before and after the addition of increasing concentrations of atrazine, terbutryn or stigmatellin prepared in 20 mM Tris (pH 8.0)/20 µM cyt c/30 µM UQ0. After each addition the cell was equilibrated for 60 s before measuring the photocurrent, which was sufficient to allow stabilisation of the applied current required to maintain a potential of −100 mV vs SCE. Maximal photocurrents were plotted as a function of inhibitor concentration and fitted with a logistic function to determine the IC50 and IC5 (see text). These IC50 values were used to estimate Ki using the Cheng–Prusoff equation (see text).
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9

Immobilized Lipase Enzyme Assay

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All reagents used in this study were purchased from Sigma Aldrich (Saint Quentin Fallavier) France, including, Lipase from Candida Rugosa enzyme (CRL, type VII, ≥700 unit/mg solid), Lipase from porcine pancreas (PPL, type II, 30–90 units/mg protein), bovine serum albumin (BSA), diazinon, parathion methyl, paraoxon methyl, atrazine, sevin, simazine, fenitrothion, sodium phosphate dibasic, sodium phosphate monobasic, KH2PO4, K2HPO4, glutaraldehyde (grade II, 25% aqueous solution), glycerol (≥99%), 6-methyl-5propyl-4 pyrimidinone, N-hydroxysuccinimide (NHS), 1-ethyl-3(3-(dimethyl-amino)propyl)carbodiimide (EDC), acidthiol(16mercacaptohexadecanoicacid). Sulfuric acid (96%), hydrogen peroxide (30%), ethanol (99%) was purchased from Fluka. All solutions were made up with ultrapure water (resistivity no less than 18 MΩ cm and obtained from a Millipore purification system).
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10

Aptamer-based Biosensor for Pesticide Detection

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Chloroauric acid tetrahydrate (HAuCl4·4H2O), trisodium citrate, sodium citrate dihydrate, Triton X-100, mycose, sodium dodecyl sulfonate (SDS), NaCl, Na3PO4·12H2O, Tween-20, sucrose, deoxyadenosine triphosphate (dATP), bovine serum albumin (BSA), phosphate buffered saline (PBS, pH 7.4, 0.01 M), sodium chloride-sodium citrate (SSC) buffer (20 concentrate, pH 7.0), borate buffer (BB, pH 9.0, 0.1 M), and the pesticides used in this study (chlopyrifos, malathion, diazinon, atrazine, carbaryl, acetamiprid, and 2,4-D.) were purchased from Sigma Chemical Company (St. Louis, MO, USA). Streptavidin was purchased from Invitrogen (Carlsbad, CA, USA). QDs nanobeads premodified by polystyrene maleic-anhydride copolymer were provided by Shanghai Kundao Biotech Co., Ltd. (Shanghai, China). Backing cards (HF000MC100), glass fiber sample pads (CFSP001700), conjugation pads (GFCP000800), nitrocellulose membranes (135s), and absorbent pads (CFSP001700) were purchased from Millipore (Bedford, MA, USA). Sequences of aptamers for chlorpyrifos (Jiao et al., 2017 , 2016 ), aptamers for diazinon (Jokar et al., 2017 (link)), aptamers for malathion (Bala et al., 2016 (link)) and corresponding biotinylated complementary sequences (Table S1), were synthesized and purified by Sangon Biotech Co., Ltd. (Shanghai, China). Double distilled water (ddwater) was used in all experiments.
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