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14 protocols using tgf β1

1

Quantifying Lung Stromal Cell Response

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To quantify changes in cell number, 1 × 105 lung stromal cells were plated in DMEM supplemented with 10% calf serum and 1% antibiotic/antimycotic solution. For serum treatment experiments, 1 × 105 lung stromal cells from LFD-fed mice were plated with DMEM+5% serum collected from LFD- or HFD-fed mice+1% antibiotic/antimycotic solution. To test responses to TGFβ1, lung stromal cells from LFD-fed mice were grown in 5% serum from LFD- or HFD-fed mice supplemented with 10 µM of SB431542 or DMSO control or in DMEM+0.5% calf serum supplemented with 5 ng/mL recombinant mouse TGFβ1 (Bio-Techne Corporation, 7666-MB, Minneapolis, MN, USA) or PBS vehicle control. Cells were fed with media supplemented with serum every 2 days. All cell number assays were plated in triplicate and counted after 6 days with a hemocytometer and then pelleted for RNA extraction. Latent TGFβ1 was activated prior to quantification, and total TGFβ1 was measured in serum from LFD- and HFD-fed mice diluted 1:50 in buffer using TGFβ1 DuoSet ELISA (Bio-Techne Corporation, DY1679, Minneapolis, MN, USA) in duplicate per the manufacturer’s instructions.
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2

TGF-β1 and IL-1β/H2O2 Signaling in hPASMC and hPAEC

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Before experiments, both cell types (hPASMC or hPAEC) were serum-starved for 24 h. Cells were then treated for 24 h in the absence or presence of either IL-1β (0.1–100 ng/mL, Bio-Techne, Lille, France) or H2O2 (0.1–50 µM, Alfa Aesar, Kandel, Germany). In some experiments, cells were also treated in the absence or presence of TGF-β1 (0.1–10 ng/mL, Bio-Techne). To investigate the role of TGF-β1 and of its TβRI receptor in the effect triggered by IL-1β or H2O2, these treatments were also applied with or without anti-TGF-β1 blocking antibodies (1 µg/mL, 30 min pre-treatment, Bio-Techne), or with or without an inhibitor of TβRI receptor kinase activity (SB525334; 1 µM, 30 min pre-treatment, Tocris Bioscience, Bristol, United Kingdom). To investigate TβRI-dependent signaling pathways involved, cells were also treated with IL-1β or H2O2 in the absence or presence of an inhibitor of p38 (SB203580; 2 µM, 45 min pre-treatment, Tocris Bioscience) or of Smad3 (SIS3; 10 µM, 45 min pre-treatment, Tocris Bioscience). In parallel, cells were treated with TGF-β1 (5 ng/mL) for 10, 30, or 60 min to investigate Smad3 and/or p38 phosphorylation. Finally, to confirm that TGF-β1 secretion was upstream of NGF secretion, cells were also pre-treated with anti-NGF blocking antibodies (1 µg/mL, 45 min pre-treatment, Millipore, Molsheim, France) before IL-1β or H2O2 treatment.
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3

Modulating Pancreatic Cancer Cell Invasion

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BxPC3.MUC1, Neo, and Y0 cells were serum starved 18 hours before plating for the invasion assay. 50,000 cells were plated as in the invasion assay protocol. Cells were either left untreated, treated with 10 ng/ml of TGF-β1 (Peprotech, Rocky Hill, NJ, USA), or the c-Src inhibitor PP2 (Tocris), or a combination of 10 ng/ml of TGF-β1 and PP2. The invasion assay was performed as described above.
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4

TGF-β1 Signaling Pathway Modulation

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HepG2 cells (10,000 cells/well) in DMEM with 10% FBS were seeded into a 96-well plate and treated with 5 ng/ml TGF-β1 (R&D Systems, Minneapolis, MN, USA), 10 μM SB431542 (Cayman, Ann Arbor, MI, USA), 1 μM MEK1/2 inhibitor U0126 (Tocris, Bristol, UK), or a combination of TGF-β1 and SB431542 or U0126. In the control group, HepG2 cells were treated with vehicle (4 μM HCl, 0.001% BSA, and 0.025% DMSO).
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5

Culturing Lung Cells with Modulators

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MRC5 fibroblasts (ATCC cat. no. CCL-171) and adult human mesenchymal cells were cultured in DMEM (cat. no. 11965092, Thermo Fisher) with 10% fetal bovine serum (FBS, cat. no. SH883IH2540, Fisher Scientific) and 1% Pen/Strep. Cells were used within the first five passages of either being received from ATCC for MRC5 cells or being isolated from donor lungs for mesenchymal cells. Where applicable, TGFβ1 (cat. no. 100–21, Peprotech, 1 and 4 ng ml−1) and SB431442 (cat. no. 1614/1, Tocris, 5mM), a TGFβ1 inhibitor, was added to the medium after 24 h. For the mesenchyme-free hAEC2–2D culture or AEC2–2D culture, AEC2s were isolated from donor lungs via FACS as described above and cultured as previously described (44 (link)). Where applicable, sFRP2 (cat. no. 6838-FR, R&D Systems, 60 ng ml−1) and KN93 (cat. no. 422711–1MG, MilliporeSigma, 1μM) was added to the medium after 24h and for 48h.
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6

Osteoclastogenesis Induction Factors

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Macrophage colony-stimulating factor (M-CSF) and receptor activator of nuclear factor-κB ligand (RANKL) were purchased from Wako (Osaka, Japan). SB431542, interleukin-1β (IL-1β) and transforming growth factor-β1 (TGF-β1) were obtained from Tocris (Bristol, UK), R&D systems (Minneapolis, MN, USA) and Sigma (St Louis, MO, USA), respectively. Bone morphogenetic protein-2 (BMP-2) was obtained from Pfizer Inc. (Groton, CT, USA).
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7

Fibroblast Transformation via TGF-β Signaling

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After biopsy, the SSCT was minced in standard 37C culture in Dulbecoco’s Modified Eagle’s Medium (DMEM) supplemented with 10% fetal calf serum (FCS) and 1% antibiotic/antimycotic. Cells were then allowed to grow in DMEM, 10% FCS and 1% antibiotic/antimycotic with feeding every third day. Cell cultures were treated either with 5 ng/mL TGF-β1 (R&D Systems, Minneapolis, MN), 50 nM TβRI specific inhibitor, SD208 (Tocris, Minneapolis, MN), or combination of 5 ng/mL TGF-β1 and 50 nM SD208, as per experimental design. The cell cultures were analyzed by real-time PCR for gene expression and for SMAD activity using a luciferase reporter assay.
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8

Cytokine Quantification by ELISA

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TGFβ1, IL-12 and IL-10 ELISAs (all Bio-Techne) were performed as per the manufacturer’s instructions.
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9

PDAC Organoid Ligand Treatment Assay

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For the ligand treatment assay, freshly derived PDAC organoids were divided into 5 different wells on a 24-well plate and the following ligands were given at indicated concentrations in the feeding media: IL-6 (Peprotech, 200-06; 100 ng/mL), MMP9 (Sigma-Aldrich, PF024; 10 ng/mL), SDF-1 (CXCL12) (Peprotech, 300-28B; 100 ng/mL), and TGF-β1 (Biotechne, 7754-BH-005/CF; 5 ng/mL). The control organoids were given feeding media only. All PDAC organoids were imaged 72 hours after the ligand treatment.
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10

Reagent Sources for Cellular Signaling

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The reagents used in the study were obtained from the indicated suppliers: TGF-β1 from Bio-Techne (Minneapolis, MN, USA); irisin from Cayman Chemical (Ann arbor, MI, USA); LPS from Sigma (St. Louis, MO, USA), antibodies against α-smooth muscle actin (α-SMA) from Abcam (Cambridge, England), collagen type 1 alpha 1 (COL1A1) from Sigma-Aldrich (St. Louis, MO, USA), interleukin-6 (IL-6) from Santa Cruz Biotechnology (Santa Cruz, CA, USA), glyceraldehyde 3-phosphate dehydrogenase (GAPDH) from GeneTex (Irvine, CA, USA); cleaved-poly (ADP-ribose) polymerase (PARP), PARP, phosphorylated myosin light chain 2 (p-MLC 2), total myosin light chain 2 (t-MLC 2), and IL-1β from Cell Signaling Technology (Danvers, MA, USA); all other materials were obtained from Sigma.
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