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16 protocols using glutamine

1

Adipogenic Differentiation and Mouse Embryonic Stem Cell Culture

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Pre-adipocyte 3T3-L1 cells were grown in DMEM medium supplemented with 10% FBS (Gibco), 2 mM glutamine (Wisent) and 1% Penicillin/Streptomycin (Biobasic). For adipogenic differentiation of 3T3L1, the cells were plated at confluency and media was changed to induction media containing 10% FBS, 1% Penicillin/Streptomycin, 1 μM Dexamethasone, 1 μg/ml Insulin and 500 μM IBMX (Sigma). Two days post-induction, the medium was changed to maintenance media containing 10% FBS (Gibco), 1% Penicillin/Streptomycin (Biobasic), 1 μg/ml Insulin. After 3 days post-induction, 10,000 cells were plated on homemade chambers for sorting.
Mouse Embryonic Stem cell (mES) culture mES cells were grown in DMEM medium supplemented with 15% FBS (embryonic stem cell qualified, Wisent), 1 X non-essential amino acids (Sigma), 100 μM 2-Mercaptoethanol (Gibco), 1000 Units/mL Leukemia inhibitory factor (LIF, Stemcell), 2 mM glutamine (Wisent) and 1% Penicillin/Streptomycin (Biobasic) on 0.1% porcine gelatin-coated plastic dishes (Sigma). About 10,000 cells were plated for sorting as above.
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2

Macrophage Differentiation and Signaling Assay

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Opti Eagle’s minimum essential media (Opti-MEM), penicillin, streptomycin, fungizone, glutamine, and fetal calf serum (FCS) were purchased from Wisent (Montreal, QC). Ficoll–Paque was purchased from Amersham Biosciences (Montreal, QC). Human recombinant (hr) M-CSF, and hrGM-CSF were purchased from R&D (R&D Systems, Minneapolis, MN); soluble hrRANKL was produced in our laboratory. Rabbit polyclonal antibodies against human PIDD (#ab78389), Galectin 8 (#ab41649), and RHOT1 (#ab83779) were purchased from Abcam (Cambridge, MA); rabbit polyclonal antibodies against human TBC1D25 (OATL1) (#HPA029197), and USP4 (#U0635) were purchased from Sigma-Aldrich (St. Louis, MO), and fluorescent Alexa antibodies, Di Aminido Phenyl lndol (DAPI), and siRNA from Invitrogen (Burlington, ON).
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3

Drosophila Cell Culture and Transfection

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All cells were in the D-Mel (d.mel-2) background and were cultured in Express Five medium (Invitrogen) supplemented with glutamine, penicillin and streptomycin (Wisent). Transfections were performed using X-tremeGENE HP DNA Transfection Reagent (Roche) following the manufacturer's instructions. All stable cell lines were selected in medium containing 20 µg ml−1 blasticidin. While inducible pMT-based vectors contain the blasticidin resistance gene, pAc5-based vectors were co-transfected with pCoBlast to confer blasticidin resistance to the cells. Expression of the copper-inducible transgenes was induced with CuSO4 (300 µM unless otherwise indicated) for at least 8 h before experiments.
For RNA interference, dsRNAs were generated from PCR amplicons using a T7 RiboMAX kit (Promega). dsRNA derived from the bacterial kanamycin resistance gene was used as a non-target control. Twenty milligrams of dsRNA was transfected in 1X106 cells in a well of a 6-well plate using Transfast transfection reagent according to the manufacturer's protocol.
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4

Isolation and Cryopreservation of PBMC

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Peripheral blood samples (10 to 40 mL) were collected from HC (n = 15) in heparin-coated tubes. Peripheral blood mononuclear cells (PBMC) were isolated with Lymphocyte Separation Medium (Wisent). Isolated PBMC were frozen in fetal bovine serum with 10% dimethyl sulfoxide (DMSO) and stored in liquid nitrogen. PBMC were cultured in RPMI 1640 (Gibco) supplemented with 5% human serum (GemCell), 2 mM glutamine (Wisent) and penicillin/streptomycin (100 U/mL penicillin, 100 mg/mL streptomycin; Wisent).
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5

Drosophila Cell Culture and Transfection

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All cells were in the D-Mel (d.mel-2) background and were cultured in Express Five medium (Invitrogen) supplemented with glutamine, penicillin and streptomycin (Wisent). Transfections were performed using X-tremeGENE HP DNA Transfection Reagent (Roche) following the manufacturer's instructions. All stable cell lines were selected in medium containing 20 µg ml−1 blasticidin. While inducible pMT-based vectors contain the blasticidin resistance gene, pAc5-based vectors were co-transfected with pCoBlast to confer blasticidin resistance to the cells. Expression of the copper-inducible transgenes was induced with CuSO4 (300 µM unless otherwise indicated) for at least 8 h before experiments.
For RNA interference, dsRNAs were generated from PCR amplicons using a T7 RiboMAX kit (Promega). dsRNA derived from the bacterial kanamycin resistance gene was used as a non-target control. Twenty milligrams of dsRNA was transfected in 1X106 cells in a well of a 6-well plate using Transfast transfection reagent according to the manufacturer's protocol.
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6

Cellular Bioenergetics Profiling by Extracellular Flux Analysis

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The oxygen consumption rate and extracellular acidification rate (ECAR) were measured using a Mito Stress Test Kit and XF96 Extracellular Flux Analyzer (Seahorse Bioscience) per the manufacturer’s protocol. In brief, 96-well plates were coated with CellTak at a concentration of 22.5 μg/μL, per the manufacturer’s protocol, and left at 4°C overnight. On the day of measurement, cells were washed with XF base media supplemented with 10 mM glucose, 2 mM glutamine, and 1 mM sodium pyruvate (Wisent) and incubated for 1 hour to equilibrate before reading. ECAR and oxygen consumption rate measurements were taken before and after the addition of oligomycin (1 μM), carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (0.25 μM), and rotenone/antimycin (1 μM) and used to calculate adenosine triphosphate (ATP) production, bioenergetic capacity, and supply flexibility index, as previously described.19 (link)
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7

Characterization of Gold Nanoparticles in Cancer Cells

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A549 (human non-small cell lung carcinoma) and HepG2 (human hepatocellular carcinoma) cells were used to characterize gold NPs in cells. A549 cells and HepG2 cells were cultured in F-12 medium and Dulbecco’s modified Eagle’s medium (DMEM; Wisent), respectively. Medium was supplemented with 10 (v/v) fetal bovine serum (FBS; Thermo Fisher Scientific), 2 mM glutamine, 100 µg/mL streptomycin, and 100 units/mL penicillin (Wisent). Cells were kept in an incubator at 37 °C with 5% CO2 and passaged at 70% confluency.
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8

H1N1 Influenza Mouse Challenge Model

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Mice were challenged with 1.6 × 103 times the median tissue culture infectious dose (TCID50) of H1N1 A/California/07/09 (National Microbiology Laboratory, Public Health Agency of Canada) diluted in HyClone SFM4MegaVir (Cytiva) supplemented with 10 µg/ml gentamicin (Gibco Life Technologies), 100,000 U/ml penicillin G (Sigma) and 20 µg/ml glutamine (Wisent). Mice were anesthetized using isoflurane and infected by intranasal instillation (25 µl/nare). Mice were monitored for weight loss for 12 days post-infection and were euthanized if they lost ≥20% of their pre-infection weight (humane end-point). A subset of mice in each group was sacrificed 3–5 days post-infection (dpi) and lungs were harvested for evaluation of viral load and inflammation.
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9

Metabolic Profiling of 3T3-L1 Adipocytes

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On day 8, the culture medium of mature 3T3-L1 adipocytes was replaced with Seahorse XF DMEM medium (103575-100) supplemented with 1 mM sodium pyruvate (Wisent), 2 mM glutamine (Wisent), 4.5 g/L glucose (Wisent), 20 nM insulin, and (D-Ala2)GIP[Lys37PAL], then incubated at 37 °C in a non-CO2 incubator for 60 min. After hydration, the Seahorse cartridge was loaded with 1 µM oligomycin (port A), 1 µM carbonyl cyanide-4 (trifluoromethoxy) phenylhydrazone (FCCP; port B), 4 µM etomoxir (11969, Cayman) in DMSO 0.1% (port C), 1 µM rotenone (ab143145), and 1 µM antimycin (A8674, Sigma-Aldrich) in DMSO 0.001% and ethanol 0.002% (R&A; port D). OCR and ECARs were measured using an XF96 extracellular flux analyzer (Seahorse Bioscience). Cellular bioenergetics and parameter calculations were performed according to the manufacturer’s instructions, with the etomoxir effect (OCR dedicated to FAO) calculated as maxOCRFCCP-meanOCRetomoxir.
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10

Culturing Human Nasopharyngeal Carcinoma Cell Lines

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The human nasopharyngeal carcinoma cells lines CNE-2 and 6-10B were kindly provided by the Cancer Center of Sun Yat-sen University. CNE-2R and 6-10BR were obtained from their parental strains of CNE-2 and 6-10B, respectively. Four cells were cultured and maintained in RPMI medium 1640 (BI) supplemented with 10% fetal bovine serum (PAN), 1% glutamine (WISENT), 100U/ml penicillin (WISENT), and 100mg/ml streptomycin (WISENT) in humidified air at 37°C with 5% CO2.
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