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32 protocols using uv 1750 spectrophotometer

1

Synechocystis Growth and Ethanol Stress

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Synechocystis sp. PCC 6803 and the knockout mutants constructed in this study were grown in BG11 medium (pH 7.5) under a light intensity of approximately 50 μmol photons m−2 s−1 in an illuminating incubator of 130 rpm at 30°C (HNY-211B Illuminating Shaker, Honour, China) (Qiao et al., 2012 (link)). Cell density was measured on a UV-1750 spectrophotometer (Shimadzu, Japan) at OD730 or on an ELx808 Absorbance Microplate Reader (BioTek, Winooski, VT, USA) at OD630. For growth and ethanol treatment, 40 μL fresh cells at OD630 of 0.2 collected by centrifugation and were then inoculated into 200 μL of BG11 liquid medium in 96-well cultivation plates. Ethanol at a final concentration was added at the beginning of cultivation. The 96-well cultivation plates were fixed in the shaker and measured directly on ELx808 Absorbance Microplate Reader at OD630 every 12 h. To ensure accuracy of finding, the mutants with differential growth patterns under ethanol stress were then confirmed by growth in 250-mL flasks, in which 10 mL fresh cells collected by centrifugation and were inoculated into 50 mL of BG11 liquid medium in a 250 mL flask. Culture samples (1 mL) were taken and measured at both OD730 and OD630 every 12 h. Growth experiments were repeated at least three times to confirm the growth patterns.
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2

Measurement of Anthocyanin Concentration

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The anthocyanin concentration was measured using a modified version of the pH-differential procedure [58 (link),59 (link)]. The freeze-dried tissue (approximately 1.0 g) was extracted at 4 °C for 12 h using 5 mL of extraction solution (0.3% HCl/methanol). Following 15 min of centrifugation at 10,000× g, the resulting product was shifted to a sterile tube and the particulates extracted two or three times with extraction solution until no red color remained in the precipitate. The combined supernatants were diluted to 25 mL. A UV-1750 spectrophotometer (Shimadzu, Japan) was used to measure absorbance at 510 nm and 700 nm in pH 1.0 and pH 4.5 buffers. The anthocyanin concentration was determined in terms of cyanidin-3-O-glucose equivalent using the following equation: TA (mg/100 g) = A × MW × 5 × 100 × 25/e, where TA represents the total quantity of anthocyanin and A = [(A510 − A700)pH1.0 − (A510 − A700)pH4.5]. The molecular weight (MW) was 449.2 and the molar absorption (e) was 26,900. Each biological replicate sample was measured three times.
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3

Mitochondrial Imaging Probe Synthesis

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All chemical reagents in the syntheses were purchased from Energy Chemical (Shanghai, China) Co., Ltd., and used without purification unless otherwise. Solvents were dried by standard methods prior to use. MitoTracker Green FM and 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide were all obtained from Thermo-Fisher Biochemical Products (Beijing, China) Co., Ltd. 1H NMR and 13C NMR spectra of synthetic intermediates and final probe were recorded on Agilent DD2 (Agilent Technologies, Santa Clara, CA, USA) (600 MHz, 150 MHz). Electrospray ionization mass spectrometry (ESI-MS) was operated on a Bruker maXis 4G mass spectrometer (Bruker Daltonik Gmbh, Bremen, Germany). pH measurements were made on a Sartorius PB-10 pH meter (Göttingen, Germany). UV-Vis absorption spectra were recorded on a SHIMADZU UV-1750 spectrophotometer (Kyoto, Japan). Fluorescence spectra were taken on a PerkinElmer LS-55 spectrofluorometric (Waltham, MA, USA). HeLa cells were cultured in a Thermo Forma, model 371 CO2 incubator (Thermo Fisher Scientific, Waltham, MA, USA). The absorbance for an MTT assay was obtained using a Thermo Scientific Varioska Flash microplate reader (Waltham, MA, USA). Confocal microscopy fluorescence images and two-photon fluorescence images were taken using an Olympus FV1000-MPE multiphoton laser scanning confocal microscope (Olympus Co., Ltd., Nagano, Japan).
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Turbidity and Zeta Potential Analysis of OVA-CMC

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The OVA-CMC samples with and without heating were prepared to analyze the turbidities and zeta potentials. Turbidity measurements were acquired at 540 nm by using a Shimadzu UV-1750 spectrophotometer at room temperature (25 °C). Turbidities were calculated as the Eq. (1). Where, A is the absorbance, 1 is the optical path (1 cm) of the cuvette, and 2.303 is a constant. Transmittance(T)%=(102.303A1)×100%
The zeta potentials of the OVA-CMC with different heating time were measured by using a Nano ZS 90 (Malvern, Worcestershire, UK). All measurements were carried out at 25 °C with equilibrating for 60 s inside the instrument. The results were reported as averages of three times.
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Characterization of Nanoparticle Morphology and Properties

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Transmission electron microscopy (TEM) was carried out on a JEOL JEM-1400 to observe the morphology of nanoparticles. X-ray diffraction (XRD) analysis was carried out on a 2.2 kW X-ray diffractometer using Cu (60 kV, 55 mA) radiation. A Malvern Zetasizer Nano ZS (Model: ZEN 3600) was used to determine the size and zeta potential of products. The Fourier transform infrared spectroscopy (FTIR) spectra were collected by a Nicolet iS10 FTIR spectrometer with DTGS detector. Scans over wavelengths between 500 and 4000 cm−1 were selected with a resolution of 2 cm−1 and averaging 32 scans for each spectrum. A SHIMADZU UV-1750 spectrophotometer was applied for UV-Vis-NIR absorption spectra. Iron ion concentration was measured by inductively coupled plasma mass spectrometry (ICP-MS, Agilent 7500ce). A laser device (F2419V) and an infrared thermal imager (FOTRIC 220) were applied for the detection of photothermal performance.
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6

Compound-DNA Binding Kinetics Evaluation

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To evaluate the interaction between compounds and DNA, the UV-spectroscopy were recorded on a Shimadzu UV-1750 spectrophotometer. The absorbance values of calf-thymus DNA (CT DNA) (100 ng/μL) and CT DNA–compounds complex were detected in the wavelength range of 260–330 nm; the solution of compounds at concentrations of 0–30 mM was prepared in DMSO-phosphate buffer (PH = 7.4). The double reciprocal plot of 1/(AA0) vs 1/(compound concentration) is linear and the binding constant (K) of compounds–CT DNA adducts was calculated according to the method described by Connors15 . K=InterceptSlope
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7

Synechocystis sRNA Mutant Stress Response

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Synechocystis and sRNA mutant strains were grown under the same culture condition with sRNA sampling starting at a cell density of OD730 = 0.1. For biofuel treatment, 2.0–2.5% (v/v) ethanol, 0.20–0.25% (v/v) butanol, or 0.8–1.0% (v/v) hexane was added at the beginning of the cultivation. For salt treatment, BG11 with 5% NaCl (w/v) was prepared and sterilized. Next, 3–4% (w/v) NaCl of BG11 was prepared by adjusting the ratio between normal and 5% NaCl (w/v) BG11 at the beginning of cultivation. For nitrogen starvation treatment, fresh cells at the same (logarithmic) phase were collected by centrifugation at 1500×g at 4 °C and washed twice with nitrogen depletion BG11 medium. Cells were inoculated into nitrogen-depleted BG11 liquid medium in flasks. Cell density was measured on a UV-1750 spectrophotometer (Shimadzu, Japan) at OD730. Growth experiments were repeated at least five times to confirm growth patterns.
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8

Photosynthesis Rate Measurement Protocol

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The net photosynthesis rate (Pn) was monitored with a Li-Cor portable photosynthesis system (Li6400; LICOR, Huntington Beach, CA, United States) on sunny days between 09:00 and 11:00 h. All photosynthetic measurements were taken at 1000 μmol photons m-2 s-1 and a constant airflow rate of 500 μmol s-1. The concentration of cuvette CO2 was set at 400 μmol CO2 mol-1 air. For all treatments, data were recorded from 10 mature, fully exposed leaves from the same position of each selected plant. On each sampling date, Chl was extracted from harvested leaves with 80% acetone, and concentrations were determined spectrophotometrically according to the method of Arnon (1949) (link), using a UV-1750 spectrophotometer (Shimadzu, Kyoto, Japan).
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9

Absorption and Emission Spectroscopy of CTP-QDs

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Absorption spectra of CTP-QDs probes were recorded at room temperature on a UV-1750 spectrophotometer (Shimadzu Corporation, Kyoto, Japan). Emission spectra were measured on an RF-6000 fluorescence spectrometer equipped with a Xenon lamp as an excitation source (Shimadzu Corporation, Kyoto, Japan). Fluorescence measurements were conducted from 450 nm to 800 nm with a 1 nm increment per step.
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10

Metabolomic Analysis of C. cohnii Mutants

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Cell density of wild-type and mutant C. cohnii was determined by a UV-1750 spectrophotometer (Shimadzu, Kyoto, Japan) at OD490. For LC-MS metabolomic analysis, all reagents, including standard metabolites, were obtained from Sigma-Aldrich (Sigma-Aldrich, St. Louis, MO, United States). Cells were harvested by centrifugation at 8000 × g for 8 min at 25°C (Eppendorf 5430R, Hamburg, Germany). Metabolite extraction and LC-MS analysis were performed according to a previously published protocol (Li et al., 2015 (link)). Metabolomic data were normalized by interior control and cell number, and then submitted to principal component analysis (PCA) using SIMCA-P 11.5.
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