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10 protocols using il 1β

1

Macrophage Gene Expression Analysis

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Dulbecco's modified Eagle's medium (DMEM) and foetal bovine serum (FBS) were obtained from WelGene (Daegu, Korea). Streptomycin and penicillin were obtained from Lonza (MD, USA). TRI reagent solution (AM9738) and SYBER green master mix were obtained from Applied Biosystems/Ambion (Warrington, UK). Oligo(dT) primers, RT premix, and PCR premix were obtained from Bioneer Co. (Daejeon, Korea). iNOS, COX-2, TNF-α, IL-1β, IL-6, Leptin, adiponectin, RGS5, and Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) primers were obtained from Bioneer Co. (Table 1) (Daejeon, Korea). Total protein lysis buffer (PRO-PREP) and the PRO-Measure protein assay kit were obtained from iNtRON Biotechnology (Seoul, Korea). LPS (Escherichia coli 055:B5) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide (MTT) were purchased from Sigma (St. Louis, MO, USA). All other reagents and chemicals were obtained from Sigma Aldrich (St. Louis, MO, USA).
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2

Murine Macrophage Culture and Stimulation

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RAW 264.7 murine macrophages were obtained from the American Type Culture Collection (Manassas, VA, USA) and were grown in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum and antibiotics (100 U/ml penicillin G, 100 μg/ml streptomycin) at 37℃ in a humidified incubator containing 5% CO2 and 95% air. DMEM and PBS were purchased from Cellgro Mediatech Inc. (Herndon, VA, USA). Antibodies for p65, Lamin B, and β-actin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies for iNOS, IκBα, p-p65, p-IKKα/β, IKKα, IKKβ, p-ERK, ERK, p-p38, p38, p-JNK, and JNK were purchased from Cell Signaling Technology (Beverly, MA, USA). Lipopolysaccharide (LPS, Escherichia coli 0127:B8) and horseradish peroxidase (HRP)-conjugated anti-rabbit or goat antibodies were supplied by Sigma (St. Louis, MO, USA). Greiss reagent and luciferase assay kits were obtained from Promega (Madison, CA, USA). ELISA kits for TNF-α, IL-6, and IL-1β were purchased from R&D systems (Minneapolis, MN, USA). iNOS, TNF-α, IL-6, IL-1β, and β-actin oligonucleotide primers were purchased from Bioneer (Seoul, Korea).
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3

Anti-inflammatory Mechanisms of LPS-induced Responses

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The LPS (Escherichia coli 0127:B8), dimethyl sulfoxide (DMSO), PMA (phorbol 12-myristate 13-acetate) were purchased from Sigma-Aldrich (St, Louis, MO, USA). MEM medium, RPMI 1640 medium, fetal bovine serum (FBS), penicillin/streptomycin and phosphate-buffered saline (PBS) were purchased from Gibco Life Technologies (Grand Island, NY, USA). The Griess Reagent System was obtained from promega (Promega, Madison, WI, USA). Enzyme-linked immunosorbent assay (ELISA) kits for TNF-α, IL-6, and PGE2 were purchased from R&D Systems (Minneapolis, MN, USA). IL-1β, TNF-α, IL-6 and GAPDH primers were purchased from Bioneer (Daejeon, Korea). Tin protoporphyrin IX (SnPP) was purchased from Porphyrin Products (Logan, UT, USA). Primary antibodies, including iNOS, COX-2, p65, Lamin B, phospho-p65, IκBα, phospho-ERK, ERK, phospho-p38, p38, phospho-JNK, JNK, HO-1 and Nrf2 were purchased from Cell Signaling Technology, Inc. (Beverly, MA, USA). Primary monoclonal anti-β-Actin antibody was purchased from Sigma-Aldrich (St, Louis, MO, USA). The secondary antibody was purchased from Jackson ImmunoResearch Laboratories, Inc.
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4

Inflammatory Signaling Pathway Analysis

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Dulbecco’s modified Eagle’s minimum essential medium (DMEM), fetal bovine serum (FBS), penicillin, and streptomycin were purchased from Life Technologies Inc. (Grand Island, NY, USA). The antibodies for iNOS, COX-2, p65, PARP, β-actin, normal rabbit IgG and normal mouse IgG2b were obtained from Santa Cruz Biotechnology Inc. (Santa cruz, CA, USA). The enzyme immunoassay (EIA) kits for PGE2, IL-6, IL-1β, and TNF-α were purchased from R&D Systems (Minneapolis, MN, USA). TOPscript™ RT Dry MIX was purchased from Enzynomics Co. Ltd. (Daejeon, Korea). iNOS, COX-2, TNF-α, IL-6, IL-1β, and β-actin oligonucleotide primers were purchased from Bioneer (Seoul, Korea). MTT, l-N6-(1-iminoethyl)lysine (l-NIL), NS-398, Escherichia coli LPS and all other chemicals were obtained from Sigma Chemical Co. (St. Louis, MO, USA). HPLC-grade acetonitrile was purchased from Fisher Scientific Korea (Seoul, Korea) and HPLC-grade formic acid was purchased from Wako (Osaka, Japan).
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5

Macrophage Cytokine Production Protocol

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Roswell Park Memorial Institute medium (RPMI-1640) for culturing macrophage, penicillin–streptomycin, fetal bovine serum, and phosphate-buffered saline were acquired from Welgene (Gyeongsan-si, Korea). Oligo-dT and primer sequences, including COX-2, iNOS, IL-1β, IL-6, and TNF-α, were obtained from Bioneer (Daejeon, Republic of Korea). Other reagents were purchased from Invitrogen, Sigma-Aldrich, and Thermo Fisher.
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6

Inflammatory Pathway Activation in Cells

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Dulbecco's modified Eagle's medium (DMEM) (WelGene Co., Daegu, Korea), fetal bovine serum (FBS) (WelGene), streptomycin and penicillin (Lonza, Walkersville, MD, USA), TRI reagent solution (AM9738; Applied Biosystems, Ambion, Austin, TX, USA), oligodT (Bioneer Co., Daejeon, Korea), inducible nitric oxide synthase (iNOS), cyclooxygenase-2 (COX-2), TNF-α, IL-6, and IL-1β primers were obtained from Bioneer. LPS (Escherichia coli 055:B5), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide (MTT), and other reagents and chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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7

Roxatidine Modulates Inflammatory Signaling

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For this study, roxatidine (≥98% purity, Fig. 1A), primary antibodies for p65, p–IκBα, IκBα, p-ERK, p-p38, p-JNK, ERK, p38, JNK, PARP, α-tubulin, caspase-1, MKK3/6, MAPK-activated protein kinase 2 (MK2), and β-actin and peroxidase-conjugated secondary antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). p-IKK, IKK, p-Akt, Akt, p-MKK3/6, and p-MK2 primary antibodies were obtained from Cell Signaling Technology (Danvers, MA) and M5/114.15.2 (MHC class II) antibody was purchased from eBioscience (eBioscience, Affimatrix Phorbol 12-myristate 13-acetate (PMA), calciumionophore A23187 (Calcymycin; C29H37N3O6), 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyl tertazolium bromide (MTT), fluorescein isothiocyanate (FITC) isomer-I, 2,4-dinitrochlorobenzene (DNCB) and all other chemicals were purchased from Sigma Chemical Co. (St. Louis, MO). Iscove’s modified Dulbecco’s medium (IMDM) fetal bovine serum (FBS), penicillin, and streptomycin were obtained from Life Technologies Inc. (Grand Island, NY). The enzyme immunoassay (EIA) kits for TNF-α, IL-6, and IL-1β were obtained from R&D Systems (Minneapolis, MN, USA). SYBR Premix Ex Taq was purchased from Takara (Shuzo, Shiga, Japan). TNF-α, IL-6, IL-1β, and GAPDH oligonucleotide primers were purchased from Bioneer (Daejeon, Chungbuk, South Korea). SB203580 was purchased from Sigma Chemical Co. (St. Louis, MO).
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8

Molecular Mechanisms of Anti-Inflammatory Activity

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RPMI, penicillin, and streptomycin were purchased from Hyclone (Logan, UT, USA). Bovine serum albumin and LPS were purchased from Sigma (St. Louis, MO, USA). Antibodies against iNOS, COX-2, p-IKK, IKK, IκBα, p-p65 (NF-κB), p65 (NF-κB), β-actin, p-ERK, ERK, p-JNK, JNK, p-p38, and p38 were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Oligonucleotide primers for TNF-α, IL-6, IL-1β, and GAPDH were purchased from Bioneer Corp. (Daejeon, Korea).
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9

Quantitative RT-PCR Analysis of Gene Expression

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Total RNA was isolated from HaCaT cells using TRIzol (Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol and a previously described method with a slight modification [17 (link)]. cDNA was synthesized from 1 µg RNA by a reverse transcriptional reaction. The qPCR amplification was performed with SYBR-Green/ROX qPCR Master Mix (2×) (BioFact Co., Daejeon, Republic of Korea). The PCR primers for IL-6, TNF-α, IL-1β, iNOS, PLTP, APOE, ABCA1, and GAPDH were obtained from Bioneer Corp. Primer sequences are listed in Table 1.
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10

Anti-inflammatory Effects of Compounds

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Rapamycin and MPA were synthesized at IKSU Co., Ltd. (Seoul, Korea). Dulbecco's modified Eagle medium (DMEM), Dulbecco's phosphate-buffered saline (Dulbecco's PBS), antibiotic (penicillin, streptomycin), fetal bovine serum (FBS), and trypsin-EDTA were purchased from WelGENE Inc. (Daegu, Korea). Recombinant human TNF-α was purchased from R&D Systems (Minneapolis, MN, USA). 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), PD98059, and SP600125 were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Antibodies specific to ICAM-1, phospho-extracellular signal-related kinases (ERK), phospho-IκBα, and lamin B were purchased from Cell Signaling Technology (Beverly, MA, USA). phosphor-c-Jun N-terminal kinases (JNK) and Phosphor-p38, and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) antibodies were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA), and inducible nitric oxide synthase (iNOS) antibodies were obtained from BD Bioscience (San Jose, CA, USA). Antibodies specific to NF-κB p65 were obtained from Abcam (Cambridge, MA, USA). Secondary antibodies specific for anti-goat IgG, anti-mouse IgG, and anti-rabbit IgG were purchased from Vector Laboratories (Burlingame, CA, USA). ICAM-1, iNOS, IL-1β, IL-6, IL-8, and GAPDH oligonucleotide primers were obtained from Bioneer (Seoul, Korea).
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