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3 protocols using reducing sds sample buffer

1

Western Blot Analysis of mEGFP and Tubulin

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Ten microliter translation reactions were performed with 2.8 nM mEGFP mRNA (folded) and 1 μM WT NT-hFMRP as described previously with nLuc mRNA. Forty microliters of 2× reducing SDS sample buffer (Bio-Rad # 1610737) was then added and heated at 70 °C for 15 min. Ten microliters was then separated by standard Tris-Glycine SDS-PAGE (Thermo # XP04200BOX) and transferred on to 0.2 μm polyvinylidene difluoride membrane (Thermo # 88520). Membranes were then blocked with 5% (w/v) nonfat dry milk in TBST (1× Tris-buffered saline with 0.1% (v/v) Tween 20) for 30 min at RT before overnight incubation with primary antibodies in TBST at 4 °C. After three 10 min washes with TBST, membranes were incubated with horseradish peroxidase (HRP)–conjugated secondary antibody in TBST for 1 h at RT and then washed again with three 10 min washes with TBST. Chemiluminescence was performed with SuperSignal West Pico PLUS for GFP (Thermo # 34577) and with SuperSignal West Femto Maximum Sensitivity Substrate (Thermo # 34095) for tubulin. Blots were imaged using an Azure Sapphire Biomolecular Imager. Rabbit anti-GFP (Cell Signaling # 2956S) was used at 1:1000. Mouse antitubulin (Sigma # T9026-2ML) was used at 1:1000. HRP-conjugated goat anti-rabbit IgG (H + L) (Thermo # 31460) was used at 1:60,000 for GFP and HRP-conjugated goat antimouse IgG (H + L) (Thermo # 31430) was used at 1:10,000 for tubulin.
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2

GST Pull-Down Assay for Protein-Protein Interactions

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To perform GST pull down experiment, 1 μg recombinant GST-tagged EZH2/EED protein was mixed with 1 μg purified protein of interest in 1 ml NP-40 lysis buffer (GenDEPOT) with a protease and phosphatase inhibitor (Thermo). The mixture was incubated with Glutathione Sepharose 4B (GE Healthcare) for 1 h at room temperature. Then, the protein-attached beads were collected by centrifugation followed by repeated washing. To denature proteins, beads were added to 2× reducing SDS-sample buffer (Bio-Rad) and heated at 95 °C for 10 min. Protein samples were subjected to western blot assay for further analysis. The recombinant proteins used were listed in Supplementary Table 5.
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3

Immunoprecipitation-based Protein Analysis

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Whole-cell lysate was obtained by lysing cells in the NP-40 lysis buffer (GenDEPOT) with a protease and phosphatase inhibitor (Thermo). The lysate was kept on ice for 15 min followed by sonication at 5 s on and 5 s off for 60 s. Insoluble material was removed by centrifugation. Lysates were pre-incubated with Dynabeads protein A/G (Invitrogen) to eliminate nonspecific binding. Then, antibodies were mixed into lysates with new-added Dynabeads and incubated at 4 °C overnight. The immune complexes were collected using magnetic separator and washed three times with lysis buffer. To denature proteins, beads were added to 2× reducing SDS-sample buffer (Bio-Rad) and heated at 95 °C for 10 min. Protein samples were subjected to western blot assay for further analysis.
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