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7 protocols using bovine α chymotrypsin

1

Simulated Digestion of Phospholipids

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Egg L-α-phosphatidylcholine (PC, lecithin grade 1, 99% purity) was obtained from Lipid Products (South Nutfield, Surrey, UK). Porcine gastric mucosa pepsin, bovine α-chymotrypsin, pancreatic α-amylase, porcine colipase, porcine pancreatic lipase and bile salts were obtained from Sigma (Poole, Dorset, UK). Lipase for the gastric phase of digestion was a gastric lipase analogue of fungal origin (F-AP15) from Amano Enzyme Inc. (Nagoya, Japan). All flavonoid and other phytochemical standards were obtained from either Sigma-Aldrich (Poole, UK) or Extrasynthese (Genay, France). All solvents were HPLC grade, water was ultra-pure grade, and other chemicals were of AR quality.
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2

CBG Glycoforms Proteolysis Sensitivity

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The CBG glycoforms were tested for their sensitivity to proteolysis after incubation with
proteases (neutrophil elastase, bovine α-chymotrypsin, LasB) that specifically
target the CBG RCL (Fig. 1C). The amounts of
enzymes used were adjusted to produce ~35–55% reductions in the steroid-binding
capacity of the recombinant un-mutated CBGs. Neutrophil elastase (Elastin Products) was
reconstituted at 0.1 µg/µL in a buffer containing 0.05 M NaAc
(pH 5) and 0.1 M NaCl. Indicated amounts were added to CBG samples in
100 µL 20 mM Tris (pH 8) and incubated for 10 min at
37°C followed by the addition of 5 mM phenylmethanesulfonyl fluoride to stop
reactions, prior to steroid-binding capacity assays or SDS-PAGE. Bovine
α-chymotrypsin (type II from pancreas; Sigma-Aldrich) was reconstituted at
1 µg/µL in 0.1 M Tris–HCl (pH 7.5), 0.5 M NaCl.
Indicated amounts were incubated with CBG samples as described for neutrophil elastase,
prior to steroid-binding capacity assays or SDS-PAGE. Medium from a culture of
Pseudomonas aeruginosa was used as a source of LasB (Simard et al. 2014 (link)). Indicated
amounts were added to CBG samples in 100 µL 20 mM Tris (pH 8) and
incubated (3 h at 37°C) followed by addition of 5 mM EDTA to stop
reactions, prior to steroid-binding capacity assays or SDS-PAGE.
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3

Synthetic Peptide Library Preparation

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2-(6-chloro-1H-benzotriazole-1-yl)-1,1,3,3-tetramethylaminium hexafluorophosphate (HCTU), Fmoc-D-Val-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Arg(Pbf)-OH, Fmoc-β3-HAsn(Trt)-OH, Fmoc-β3-HArg(Pbf)-OH and Fmoc-N-Me-Asn(Trt)-OH were purchased from AAPPTec LLC. Fmoc-D-Asn(Trt)-OH, Fmoc-D-Ala-OH, Fmoc-D-Tyr(tBu)-OH, Fmoc-D-Ser(tBu)-OH, Fmoc-β3-HVal-OH, Fmoc-β3-HAla-OH, Fmoc-β3-HTyr(tBu)-OH, Fmoc-β3-HLys(Boc)-OH, Fmoc-β3-HSer(tBu)-OH Fmoc-N-Me-Val-OH, Fmoc-N-Me-Ala-OH, Fmoc-N-Me-Tyr(tBu)-OH, and Fmoc-N-Me-Ser(tBu)-OH were purchased from Chem-Impex International, Inc. Fmoc-N-Me-Arg(Pbf)-OH was purchased from ChemPep. NovaPEG Rink Amide Resin and Fmoc-protected α-amino acids were purchased from Novabiochem. Fmoc-α-Me-Ala-OH and Fmoc-N-Me-Lys(Boc)-OH, N,N-diisopropylethylamine (DIEA) and bovine α-chymotrypsin were purchased from Sigma-Aldrich. All other reagents were purchased from Acros Organics, Fisher Scientific, JT Baker, and Sigma-Aldrich.
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4

Assay of Serine Proteases

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Human plasma serine proteases, including thrombin, FXa, FXIa, FIXa, FVIIa/tissue factor, and plasmin were obtained from Haematologic Technologies (Essex Junction, VT). FXIIa was purchased from Enzyme Research Laboratories (South Bend, IN). Bovine α-chymotrypsin, bovine trypsin, and human plasma kallikrein were obtained from Sigma-Aldrich (St. Louis, MO). The substrates Spectrozyme TH, Spectrozyme FXa, Spectrozyme FIXa, and Spectrozyme PL. Spectrozyme VIIa, Spectrozyme FXIIa, and Spectrozyme PK were obtained from Biomedica Diagnostics (Windsor, NS Canada). Factor XIa substrate (S-2366) and trypsin substrate (S-2222) were obtained from Diapharma (West Chester, OH). N-succinyl Ala-Ala-Pro-Phe-p-nitroanilide substrate for chymotrypsin is from Sigma-Aldrich. All enzymes and substrates were prepared in 20-50 mM TrisHCl buffer, pH 7.4, containing 100-150 mM NaCl, 2.5 mM CaCl2, 0.1% PEG8000, and 0.02% Tween80. In the case of FIXa, 33% v/v ethyleneglycol was also added to the buffer.
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5

HPLC Protocol for Amino Acid Analysis

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A Millipore–Direct Q3 UV System (Molsheim, France) was used to obtain Milli-Q® water (18.2 MΩ·cm). For the HPLC analysis, the reagents Chloride acid (HCl), formic acid (98% p.a), and acetonitrile HPLC gradient grade were obtained from Carlo Erba Reagents SAS (Val de Reuil, France). Amino acids standard H was purchased from Thermo Fisher Scientific (Rockford, MA, USA), and the phenol BioXtra ≥ 99.5% (GC), nonafluoropentanoic acid, bovine trypsin from bovine pancreas ≥ 10,000 BAEE units/mg protein, calcium chloride dehydrated (CaCl2·2H2O), benzoyl-L-arginine-p-nitroanilide (L-BAPA), dimethyl sulfoxide (DMSO), tris(hydroxymethyl)aminomethane, glacial acetic acid (≥99%), sodium hydroxide (NaOH), porcine trypsin type IX-S, bovine α-chymotrypsin, type II, Streptomyces griseus protease, type XIV and casein from bovine milk were purchased from Sigma-Aldrich (St. Louis, MI, USA).
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6

Synthetic Lysophospholipid Characterization

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Synthetic lysophospholipids were purchased from Avanti Polar Lipids (Alabaster, AL, USA). FAs and 2-p-toluidinonaphthalene-6-sulphonate (TNS) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Digestive enzymes (porcine pepsin and trypsin, bovine α-chymotrypsin) as well as model protein substrates (bovine α-casein and cytochrome c) were purchased from Sigma-Aldrich. The recombinant Gly m 4 was overexpressed in E. coli and purified as described previously [15 (link)].
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7

In vitro Digestive Enzyme Protocol

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Egg L-α-phosphatidylcholine (PC, lecithin grade 1, 99% purity) was obtained from Lipid Products (South Nutfield, Surrey, UK). Porcine gastric mucosa pepsin, bovine α-chymotrypsin, pancreatic α-amylase, porcine trypsin, porcine colipase, porcine pancreatic lipase and bile salts were obtained from Sigma (Poole, Dorset, UK). Lipase for the gastric phase of digestion was a gastric lipase analogue of fungal origin from Amano Enzyme Inc. (Nagoya, Japan). All other chemicals were of Analar quality.
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