The largest database of trusted experimental protocols

13 protocols using 70 μm filter

1

Isolation of Brain Microglia

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were deeply anesthetized with Ketamine and Xylazine and then cardiac-perfused with 50 mL of ice-cold PBS. Subsequently, mice were decapitated and the brain was removed and collected into ice-cold tubes containing PBS. Brain tissue was dissociated using the Adult Brain Tissue Dissociation Kit (Miltenyi, Cat: 130-107-677) as per manufacturer’s guidelines with the gentleMACS dissociator (Miltenyi, Cat:130-093-235) and strained with 70 μm filters (Miltenyi, Cat: 130-098-462). Homogenates underwent debris removal as per the manufacturer’s guidelines (Miltenyi, Cat:130-109-398). Samples were then incubated with CD11B-microbeads (Miltenyi, Cat: 130-097-142) as per manufacturer’s guidelines, then washed with Running Buffer (Miltenyi, Cat: 130-091-221) and centrifuged at 500×g for 5 min. Pellets were resuspended with 2 mL Running Buffer and subjected to the autoMACS Pro Separator (Miltenyi, Cat:130-092-545) “Possel” selection protocol. Positive fractions were collected, centrifuged at 500×g for 5 min and then re-suspended in 200 μL Qiazol lysis reagent (Qiagen, Cat: 79306) and flash frozen until RNA was isolated.
+ Open protocol
+ Expand
2

Isolation of Mouse Lymphoid and Bone Marrow Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse lymphoid organs (spleen and lymph nodes) were collected in cold RPMI-640 (Thermo Fisher) with 10% FBS (ThermoFisher). Spleen and lymph nodes were disrupted and processed into single cell suspension by syringe plunger and passaged through 70 μm filters (Miltenyi Biotec), followed by red blood cell lysis process (BD).
For bone marrow harvest, the tibia and femur were cleaned and cut at both ends to allow for bone marrow to be flushed out. These bones were collected into empty 200 μL microcentrifuge tubes; these tubes had a small hole at the bottom tip which was created by pushing a 16-gauge needle through. These 200 μL tubes were then placed into 1.5 mL microcentrifuge tubes with the lid removed. Samples were centrifuged at high speed for 10 seconds which enabled bone marrow to be flushed out to the bottom of the 1.5 mL tubes. Cell pellets were then resuspended in culture media and passed through a 70 μm cell strainer to prevent cell clumping.
+ Open protocol
+ Expand
3

Zebrafish Retinal Cell Dissociation and Sorting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Zebrafish were euthanized in 0.2% 2-phenoxy-ethanol, and retinas were dissected and placed in Leibowitz medium (Thermo Fisher). Retinas were subsequently placed in 20 U/ml papain (10 retinas per 1 ml) (Worthington), and incubated at 28°C for 30 min with gentle agitation. Cells were pelleted and resuspended in PBS containing 0.1 mg/ml leupeptin (Sigma-Aldrich) and 10 U/ml DNaseI (Roche). Cells were filtered through a 70-μm filter (Miltenyi Biotec), kept on ice until sorting, and incubated with 5 μg/ml propidium iodide (PI; Life Technologies).
Cells were transferred into a 5-ml FACS tube and loaded into a FACS AriaII. Gating was set using dissociated retinas from albino zebrafish both unstained and PI stained and unstained Tg[gfap:EGFP]nt11 zebrafish. GFP+ and GFP cells were sorted directly into Trizol LS (Life Technologies) and immediately flash frozen.
For scRNA-seq, cells were methanol-fixed after the 10x Genomics protocol. Dissociated cells were pelleted, resuspended in 100 μl Dulbecco’s PBS in cryovials and added with 900 μl −20°C methanol dropwise while slowly vortexing. Cells were left on ice for 15 min and then placed directly in −80°C.
+ Open protocol
+ Expand
4

Cell Sorting and GFP Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
72 h after electroporation, cells were trypsinized, counted, and resuspended at the concentration of 3-5 × 106 cells/ml in an appropriate volume of sorting buffer (phosphate-buffered saline (PBS)/0.5% bovine serum albumin (BSA)/2 mM EDTA and 100 units/ml penicillin/streptomycin (Life Technologies)) for flow cytometry analysis. Immediately before cell sorting, samples were filtered through a 70-μm filter (Miltenyi Biotec) to remove any clumps or aggregates. Sorting was performed in sterile conditions throughout the experiments in the sorting buffer described above recovering at least 0.5 × 106 cells per experimental condition. Cell sorting was carried out in a Synergy 2 L instrument (Sony Biotechnology Inc.); flow cytometry was performed in a BD LSR Fortessa analyzer (BD Biosciences) and FACSDiva software was used. Proper electronic gates of side scatter and forward scatter parameters were set in order to exclude cell debris and dead cells. The SK-N-MC or HEK293 GFP negative control cells were analysed in order to assess the minimal fluorescein isothiocyanate baseline. Sorting was performed in sterile conditions throughout the experiment. Sorted cells were seeded individually per well in a 96 well-plate containing DMEM supplemented medium.
+ Open protocol
+ Expand
5

Single-Cell Isolation and Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The excised primary tumor and spleen from each mouse were minced and digested enzymatically using the MACS Tissue Dissociation Kits (Miltenyi Biotec, Auburn, CA), according to the manufacturer's guidelines. After dissociation, each sample was filtered through a 70 μM filter (Miltenyi Biotec) and centrifuged at 300 ×g for 10 min; the cell pellet was resuspended in RPMI-1640. Each single-cell suspension was split into two. One half of the tumor single cell suspension was treated with Red Blood Cell Lysis Solution (Miltenyi Biotec), washed twice, and counted.
Spleen single-cell suspensions and the other half of the tumor single cell suspensions were layered over Ficoll-Paque premium (GE Healthcare Life Sciences, Pittsburgh, PA) and centrifuged at 400 ×g for 40 min at 20°C to allow density gradient separation of the leukocytes. After Ficoll, the leukocytes (buffy coat) were harvested, washed twice with PBS, and counted.
Single-cell suspensions were stained following standard protocols. Briefly, cells were washed using FACs buffer (PBS, 2% FBS, and 0.02% sodium azide). Cell pellets were resuspended, blocked using Rat IgG and Mouse IgG (Jackson ImmunoResearch, West Grove, PA), washed, and incubated with the appropriate antibodies described below. After incubation, the cells were washed, fixed in paraformaldehyde, and stored at 4°C.
+ Open protocol
+ Expand
6

Isolation and Culture of Mouse Bone Marrow Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To isolate whole bone marrow cells, long bones of 8–10-week-old C57BL/6J mice were triturated with mortar and pestle in PBS supplemented with 0.5% bovine serum albumin and 2 mM EDTA. Cells were filtered through a 70-μm filter (Miltenyi Biotech), washed, and centrifuged (10 min; 300 g; 4 °C). After erythrocyte lysis in hypotonic NH4Cl − buffer, cells were filtered through a 30-µm filter (Miltenyi Biotech). For neutrophil isolation the mouse Neutrophil Isolation Kit (130-097-658, Miltenyi Biotec) was used according to the manufacturer’s instructions. Bone marrow derived non-neutrophils that were retained in the separator column after neutrophil isolation were plated in non-tissue culture treated dishes and treated with 20 ng/µl murine M-CSF (315-02, Peprotech) for 7 days to generate macrophages56 (link).
+ Open protocol
+ Expand
7

Plasma Cell Isolation from Bone Marrow

Check if the same lab product or an alternative is used in the 5 most similar protocols
PC were enriched from BM mononuclear cells, using a magnetic cell-sorting CD138 MicroBeads kit (Miltenyi Biotec; BergischGlabach, Germany) according to the manufacturer’s protocol. BM samples were filtered with a 70 μm filter (Miltenyi Biotec), and suspended in RPMI solution (Dutscher; Brumath, France). After centrifugation (160 G), and removal of the supernatant, mononuclear cells were marked with CD138 microbeads at 4 °C for 15 min. The cells were then separated on a column kit separator (Miltenyi Biotec). PC enrichment was controlled on a cytospin slide by a cytologist. The median efficiency of CD138 selection was 97.5%.
+ Open protocol
+ Expand
8

Isolation of Retinal Ganglion Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Retinal ganglion cells were isolated using the Miltenyi Adult Brain Dissociation Kit (Miltenyi Biotec, 130-107-677) and MACS cell separation system. Briefly, whole neurosensory retinas were harvested, and retinal tissues were dissociated in manufacturer-provided enzyme mixtures using the gentle MACS dissociator pre-set program: 37C_ABDK_01 (Miltenyi Biotec). Dissociated retinal cell suspensions were filtered using a 70 μm filter (Miltenyi Biotec, 130-098-462) and resuspended in debris removal solution. Retinal cells were resuspended and incubated in red blood cell removal solution for 10 minutes at 4 °C. The resulting cell suspension was then subjected to a selection protocol using MACS magnetic separation LS columns (Miltenyi Biotec, 130-042-401) and the following antigen-coated magnetic microbeads: (1) anti-CD11c (Miltenyi Biotec, 130-108-338), (2) anti-ACSA2 (Miltenyi Biotec, 130-097-678), (3) anti-CD45 (Miltenyi Biotec, 130-052-301), (4) anti-CD15 (Miltenyi Biotec, 130-094-530), and a final positive selection step (5) anti-Thy1 (Miltenyi Biotec, 130-121-278), using the manufacturer’s protocol to isolate the final target cell population: CD11cACSA2− CD45− CD15− Thy1+. RGC enrichment in the final cell fraction was confirmed using qPCR.
+ Open protocol
+ Expand
9

Tissue Dissociation for Single-Cell Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumors (T) or adjacent nontumor (ANT) tissues from cohort A were minced with scissors and digested with a human tumor dissociation kit (Miltenyi Biotec, 130–095–929), as per the manufacturer's protocol with some modifications. For digesting lung samples for MRC001–004, the digestion cocktail from the kit was used, whereas the digestion cocktail with the addition of 0.8 mg/mL dispase II (Sigma, 4942078001) was used to digest MRC006–10. In brief, each lung sample in 5 mL of digestion cocktail buffer was put into a gentleMACS Octo dissociator (Miltenyi Biotec) for 30 minutes to 1 hour depending on the tumor size in a “37C_h_TDK_3 digestion” program. 20 mL of 10% FBS DMEM (Thermo Fisher Scientific) media was added into the digestion to stop the reaction and the material was further filtered through a 70-μm filter (Miltenyi Biotec). The remaining clumps on filters were grounded using the bottom of a 1-mL syringe (BD Biosciences). Cell suspensions were spun down, lysed using ACK buffer (Thermo Fisher Scientific), and spun down again to obtain single-cell suspensions ready for downstream experiments.
+ Open protocol
+ Expand
10

PBMC Isolation and Cryopreservation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Peripheral blood was collected in Cell Preparation Tube (CPT) vacutainers with sodium citrate (Becton Dickinson) and centrifuged according to the manufacturer’s recommendations for separating mononuclear cells from whole blood. PBMCs were washed with Dulbecco’s phosphate buffered saline (PBS) and frozen in RPMI 1640 media with 10% fetal bovine serum and 10% dimethyl sulfoxide. Frozen, isolated PBMCs were quickly thawed in a 37 °C water bath. The thawed PBMCs were diluted into 10 mL of flow buffer (PBS, 5% FBS, 2 mM EDTA, 0.09% sodium azide). The suspension was passed through a 70 μM filter (Miltenyi Biotech, Auburn, CA, United States) into a fresh tube. The cellularity of the filtered suspension was counted on a ThermoFisher Countess (ThermoFisher Scientific, Waltham, MA, USA). Cells were pelleted (800× g for 7 min) and the supernatant aspirated. The cells were resuspended in a flow buffer at 1 × 107 cells/mL. 3 × 106 cells in a total of 0.3 mL were set aside for PrimeFlowTM processing. The remaining cells were washed two times with PBS then lysed in 50 μL RIPA buffer with cOmplete and PhosSTOP added (Millipore-Sigma, St. Louis, MO, USA). Lysates were clarified by centrifugation at 12,000× g for 12 min at 4 °C, then the clarified lysates were stored at −80 °C.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!