The largest database of trusted experimental protocols

3 protocols using rubisco

1

Thermodynamic Analysis of Rubisco Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
The same, commercially obtained spinach Rubisco (Sigma-Aldrich; catalogue # R8000; S1 Fig; specific activity 0.05 units / mg) was inactivated by dissolving in 10 mM HEPES buffer pH 7.9 containing 100 μM EDTA and dialyzing twice against 2 L of ITC buffer (10 mM HEPES buffer pH 7.9) using a 3,500 MWCO dialysis membrane. A low volume Nano ITC instrument (TA Instruments) with a cell volume of 190 μL was used for this study. Stock solutions of RuBP (100 mM) and (+)-ABA (10 mM) were diluted to the working concentration using ITC buffer. The ITC experiments were performed at 20°C. Rubisco, ligands and buffer were equilibrated at 20°C and degassed before the experiment. A 50 μL syringe was used to deliver 19 injections (2.5 μL each) of the ligands (0.75 mM RuBP or 5 mM (+)-ABA) into the cell containing either ITC buffer or Rubisco (39.42 μM). The first injection of 0.71 μL was excluded from data processing. A stir rate of 200 rpm was used to mix the reactants continuously. The data were processed using the NanoAnalyze software (TA Instruments) using the ‘Independent binding’ model.
+ Open protocol
+ Expand
2

Metabolic Pathway Analysis with Isotopic Labeling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following reagents were obtained from Sigma-Aldrich: glucose, 1,3-propanediol, phenylboronic acid, cycloheximide, 23BD, acetoin, pyruvate, PEP, 6PG, G6P, F6P, Ru5P, R15P, ATP, dithiothreitol (DTT), NADH, NADPH, NADP+, phosphocreatine, RuBisCO, pyruvate kinase, lactate dehydrogenase, G6P dehydrogenase, 3PGA kinase, GAPDH and creatine kinase. U-13C glucose and 13C-NaHCO3 were obtained from Cambridge Isotope Laboratories. IPTG and chloramphenicol were obtained from Fischer Scientific. Gentamycin was purchased from Teknova. Spectinomycin was purchased from MP Biomedicals. Kanamycin was purchased from IBI Scientific. Phusion polymerase was purchased from New England Biolabs. All oligonucleotide synthesis and DNA sequencing were performed by Eurofins MWG Operon Inc.
+ Open protocol
+ Expand
3

Plasma Depletion and Digestion using ProteoMiner

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasma depletion and on-bead digestions using ProteoMiner beads Depletion and tryptic digestion of plasma samples which had been stored at -80°C were performed as previously described in six processing batches [12] . For quality control of depletion, digestion and MS measurements, a final concentration of 50 fmol ribulose-1,5-bisphosphate carboxylase oxygenase protein (RuBisCO; Sigma-Aldrich, Taufkirchen, Germany) was spiked into each 10 μl plasma sample as an internal standard (see ESM methods section 'Quality control of sample preparation and MSmeasurement'). After digestion, samples were stored at -20°C.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!