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10 protocols using dapi dihydrochloride

1

Titanium Foil Preparation and Biocompatibility

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Titanium foils (thickness: 0.2 mm, length: 10 mm, width: 10 mm) were purchased from Northwest Institute (Xi'an, China) and washed with acetone, ethanol, and distilled water for 10 min before the experiment. Ammonium fluoride and glycerin were purchased from Aladdin Biotech (Shanghai, China). The hydrophilic drug (vancomycin) and hydrophobic drug (raloxifene) were purchased from Sigma Chemical. FITC-labeled phalloidin, MTT solution, dihydrochloride (DAPI), bicinchoninic acid kit (BCA), alkaline phosphatase (ALP), and alizarin red staining kit were purchased from Beyotime Biotechnology Co. (Shanghai, China). Tantalum target materials were supplied by ZhongNuo Advanced Materials Technology Co. (Beijing, China).
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2

Immunofluorescence Staining of CD86 and CD206

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Four-micrometer-thick paraffin sections were subjected to immunofluorescence staining overnight with the primary antibodies against CD86 (sc-19617, diluted 1:100) or monoclonal CD206 (14-9760-80, Invitrogen, diluted 1:100) at 4 °C. On the second day, the slides were washed with 1× PBS for 5 min each time and incubated with the corresponding secondary antibody (Molecular Probes, USA, diluted 1:200) for 1 h at room temperature. Dihydrochloride (DAPI, Beyotime, China, diluted 1:300) was used to visualize the nucleus. CD86 and CD206 were detected under a fluorescence microscope (DIM8, Laica, Germany). The cells that yielded positive staining results were counted using the Image Pro Plus software.
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3

Immunofluorescence Analysis of Kidney Macrophages

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In brief, paraffin sections of kidney tissues were dewaxed and rehydrated. The slices were subjected to immunofluorescence staining with the primary antibodies against F4/80 (ab6640, Abcam; diluted 1:100), CD206 monoclonal (DF4149, Affinity; diluted 1:100) or HLA-DR (MA5-32,232, Invitrogen; diluted 1:100) at 4 °C overnight. The second day, the slices were washed with 1 × PBS for 5 min/3 times and incubated with corresponding secondary antibody (Molecular Probes, USA; diluted 1:500) for 1 h at room temperature. Dihydrochloride (DAPI, Beyotime, China; diluted 1:300) was used to display the nucleus. The detection of F4/80, HLA-DR and CD206 was performed under a fluorescence microscope (IX71, Olympus, Japan). The positive cells were counted using Image pro plus software.
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4

Measuring Intracellular ROS in RCC Cells

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After different treatments, RCC cells were incubated with 10 μM dichlorodihydrofluorescein diacetate (DCFH-DA, S0033S-1, Beyotime Biotechnology) at 37°C for 20 min in the dark. Then, cell nuclei were labeled by using DAPI dihydrochloride (C1002, Beyotime Biotechnology) for 5 min. Finally, the cells were observed and photographed under a fluorescence microscope after washing with PBS three times.
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5

Comprehensive Wound Healing Analysis Using Histology and Immunofluorescence

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The wound tissues were fixed in 4% paraformaldehyde overnight, embedded in paraffin, and serially sectioned at 5 μm. To evaluate the healing process, hematoxylin-eosin (H&E) staining, Masson staining and Picrosirius red staining methods were used. For immunofluorescence analysis, following deparaffinization, antigen retrieval, and blocking, the sections were incubated with primary antibodies. The primary antibodies used were anti-CD31 antibody (ab199012, Abcam), anti-alpha smooth muscle actin antibody (ab7817, Abcam,), anti-TNF alpha antibody (ab183218, Abcam), anti-IL-6 antibody (ab214419, Abcam) and anti-VEGF antibody (ab1316, Abcam). The tissue sections were then washed three times with PBS (pH 7.4) for 5 min each. The sections were then incubated with corresponding secondary antibodies. The nuclei were stained with hematoxylin or DAPI dihydrochloride (C1006, Beyotime), and the slices were observed under an optical microscope. Quantification of the stainings was performed using ImageJ software.
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6

Regulation of Connexin 43 in Hyperglycemic Conditions

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MLO-Y4 cells were grown on glass coverslips in 24-well plates and treated when they reached 60% confluence. The cells were divided into four groups: a) control group treated with culture media only, b) high glucose group treated with culture media containing 20 mM glucose; c) inhibitor group treated with mitogen-activated protein kinases (MAPK) PD98059 (20 μM) or extracellular regulated protein kinases, (ERK) inhibitor U0126 (25μM) (MedChemExpress, Princeton, NJ, USA), and d) inhibitor (PD98059 or U0126) plus high glucose (20 mM) group. Cells were treated for 24 h, washed with PBS, fixed with 4% paraformaldehyde for 15 min at room temperature, and permeabilized using 0.1% Triton X-100 in PBS for 10 min at room temperature. The cells were blocked with 10% goat serum for 2 h at room temperature and incubated with a primary antibody against Cx43 at a 1:50 dilution overnight at 4°C. The coverslips were washed with PBS, then incubated with Cy3-labeled goat anti-rabbit secondary antibody (SA000092, Proteintech, Rosemont, IL, USA) in the dark at room temperature for 1 h. Nuclei were co-labeled using DAPI dihydrochloride (Beyotime) for 5 min at room temperature. The coverslips were mounted on slides with anti-fade mounting medium (Beyotime), and images were collected using a fluorescence microscope (Eclipse Ci, Nikon, Japan).
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7

Analyzing DNMT1 Expression in Knockdown Cells

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The stable knockdown cells were seeded in 24-well plates overnight and washed with precooled PBS for 10 min. And then they were fixed with 4% paraformaldehyde and permeabilized with 0.5% Triton X-100 at room temperature for 15 min. It was incubated with DNMT1 primary antibodies (1:500, Proteintech) at 4 °C overnight, and then washed with PBS and incubated with fluorescent secondary antibody at room temperature for 2 h. DAPI dihydrochloride (Beyotime) was used to label the nuclei. The results were analyzed using the ImageJ software.
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8

High-Content Imaging of NF-κB Activation

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BMDMs were incubated with 10 small-molecule compounds at indicated concentrations for 16 h and subsequently exposed to LPS for 30 min in CellCarrier 96-well black-walled microplates (PerkinElmer). Formalin-fixed triton-permeabilized cells were stained with P65 antibody (1:75, 8242, Cell Signaling Technologies) overnight at 4 °C followed by incubation with the secondary antibody Alexa Fluor 647-labeled Goat Anti-Rabbit IgG (1:500, A0468, Beyotime). Nuclei were counter-stained using DAPI dihydrochloride (1:2000, C1002, Beyotime). Images were then captured using an Operetta® CLS™ high-content analysis system with a 20× water objective NA 1.0 under non-confocal mode. Cell morphology was analyzed and nuclei and cytoplasm intensities were calculated based on the Harmony software (Perkin Elmer) version 4.9.
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9

Actin Microfilament Visualization

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Actin tracker red rhodamine immunofluorescence staining was used to analyze the cell skeleton and microfilaments. Cells grown on cover slides and then incubated with phalloidin-rhodamine and DAPI dihydrochloride (Beyotime Institue of Biotechnology, Jiangsu, China). Actin tracker red rhodamine microfilaments were observed and analyzed with fluorescence microscope.
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10

Comprehensive Wound Healing Evaluation

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At different times (3, 7, and 14 days), the wound tissue was taken and fixed with 4% paraformaldehyde, paraffin-embedded, sliced into approximately 5 ​μm sections, and finally stained with H&E, Masson's trichrome and Picrosirius red to evaluate wound healing. For immunofluorescence evaluation, the deparaffinized and rehydrated sections of the treated wound tissue (7, 14 days) were combined with anti-CD31 antibody (ab199012, 1:200) and anti-α smooth muscle actin antibody (ab7817, 1:200) and incubated overnight at 4 ​°C. Then, the corresponding fluorescently labeled secondary antibodies (Alexa Fluor/ab150077 and ab150115, 1:400) were used. Similarly, the wound tissue (14 days) was frozen and sectioned and incubated with ethidium dihydrogen (DHE, 2 ​μM) at 37 ​°C for 30 ​min to measure the overall superoxide content of the sample. The nucleus was stained with hematoxylin or DAPI dihydrochloride (C1006, Beyotime). Finally, the tissue sections and immunofluorescence sections were observed with an ordinary microscope (NL CD500, China) and an inverted fluorescence microscope (IFM Nikon Corporation, Japan), respectively.
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