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7 protocols using serca2

1

Modulation of Calcium Signaling Pathways

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N,N,N′,N′ -Tetrakis (2-pyridylmethyl) ethylenediamine (TPEN) and thapsigargin (TG) were obtained from Sigma (St. Louis, MO, United States). BAPTA-AM, EGTA-AM, H89, 2APB, and stattic were purchased from MCE (NJ, United States). KN-93 and KN-92 were obtained from Selleck (Houston, TX, United States). Antibodies including anti-p-STAT3, -STAT3, -p-CaMKII, -CaMKII, -GAPDH, and the secondary antibody were obtained from Cell Signaling Technology (Beverly, MA, United States). Anti-IP3R,-p-RyR2 and -SERCA2 were purchased from Abcam (Cambridge, United Kingdom). Anti-RyR2 was purchased from Proteintech Group (Chicago, IL, United States). Anti-ZIP9 was obtained from Biorbyt (Cambridge, United Kingdom). Fluorescence dyes were obtained from Invitrogen (Carlsbad, CA, United States).
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2

Immunoblotting of Cellular Signaling Proteins

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Cellular proteins were immunoblotted for: VDR (Santa Cruz); ER stress proteins
[pPERK and PERK (Cell Signaling), CHOP (Santa Cruz)]; proteins involved in
cholesterol signaling [JNKp (Cell Signaling), PPARγ, CD36, and SR-A1
(Santa Cruz)]; SERCA2 (ABcam); and pCAMKII and CAMKII (Cell Signaling), and
β-actin (Cell Signaling) was used as a loading control. For immunoprecipitation,
macrophage lysates from control-L mice after 6 wks of chow were incubated with monoclonal
anti-VDR (ABcam), then blotted with anti-SERCA2 (ABcam).
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3

Immunofluorescence Localization of SERCA2 and VDR

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Peritoneal macrophages were fixed on slides with 4% formalin, blocked
with 5% goat serum, and incubated with SERCA2 (1:250, Abcam) and VDR (1:200, Santa
Cruz) overnight, then incubated with secondary antibody 488-conjugated goat anti-rat
(green) and 539-conjugated goat anti-rabbit (red). Images were captured on a confocal
microscope (Olympus Fv1000).
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4

Western Blot Analysis of Bone Remodeling Markers

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Total cellular proteins were extracted using the RIPA lysis buffer, and a BCA assay kit (Beyotime) was used to quantify the protein concentrations. The same amounts of proteins (20 μg) were separated by polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto PVDF membranes (Millipore). Membranes were blocked in 5% low-fat milk for 1 h, and then incubated with primary antibodies against SERCA1 (1:500; Affinity Biosciences), SERCA2 (1:5000; Abcam), SERCA3 (1:5000; Proteintech), IP3R (1:1000; Affinity Biosciences), PLCβ1 (1:1000; Proteintech), P2Y2 (1:1000; Affinity Biosciences), P2Y4 (1:1000; Affinity Biosciences) P2Y12 (1:2000; Abcam), Col1a1 (1:1000; Abcam), Runx2 (1:1000; Affinity Biosciences), Osx (1:1000; Bioss), β-catenin (1:1000; Proteintech), OPG (1:1000; Abcam), RANKL (1:1000; Proteintech), DKK1 (1:2000; Proteintech), NFATc1 (1:500; Santa Cruz), Calcr (1:1000; Proteintech), Ctsk (1:1000; Affinity Biosciences), TRAP (1:2000; Abcam), PPARα (1:1000; Affinity Biosciences), p-PPARα (1:1000; Affinity Biosciences) or β-actin (1:4000; Proteintech) overnight at 4  °C. The blots were incubated with HRP-conjugated goat-anti-rabbit secondary antibody (1:5000; Abcam) or HRP-conjugated goat-anti-mouse secondary antibody (1:5000; Abcam), and then visualized using an enhanced chemiluminescence system (Image Quant 350, GE Healthcare).
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5

Protein Expression Analysis in Tissue Lysates

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Tissue and cell lysates were prepared using RIPA buffer (20 mM Tris-Cl pH 7.5, 140 mM NaCl, 1 mM CaCl2 and MgCl2, 10 mM NaF, 1% NP-40, 10% glycerol, 2 mM Na-Vanadate, and 1 mM PMSF). Proteins were subjected to SDS-PAGE and were then transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore). Immunoblotting was performed with the following primary antibodies, according to the manufacturer’s protocol: KLF9 (Invitrogen; Cat: 701888; Clone name: 5H16L7; Dilution: 1:1000), KLF9 (Abcam; Cat: ab227920; Dilution: 1:1000), PGC1α (Millipore; Cat: AB3242; Dilution: 1:1000), UCP1 (Abcam; Cat: ab10983; Dilution: 1:1000), SERCA2(ABclonal; Cat: A11692; Clone name: ARC0679; Dilution: 1:1000), β-Actin (ABclonal; Cat: AC026; Clone name: ARC5115-01; Dilution: 1:20,000), ARG1 (ABclonal; Cat: A4923; Clone name: ARC1164; Dilution: 1:1000), SREBP1 (ABclonal; Cat: A15586; Dilution: 1:1000), HDAC1 (ABclonal; Cat: A0238; Dilution: 1:1000), HDAC2 (ABclonal; Cat: A2084; Dilution: 1:1000), SIN3A (Proteintech; Cat: 14638-1-AP; Dilution: 1:1000), STAT3 (Santa Cruz Biotechnology; Cat: sc-8019; Dilution: 1:50), P-STAT3 (Santa Cruz Biotechnology; Cat: sc-8059; Dilution: 1:50), p65 (Cell Signaling Technology; Cat: #8242; Clone name: D14E12; Dilution: 1:1000), P-p65 (Cell Signaling Technology; Cat: #3033; Clone name: 93H1; Dilution: 1:1000).
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6

Multiparameter Immunofluorescence Assay

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ANF (Abcam ab91250); BrdU (Sigma B8434); Desmin (Sigma D1033); Gapdh (Millipore MAB374); H3K9me3 (Abcam ab8898); H3K27me3 (Abcam ab108245); IgG (Santa Cruz sc2027); Nefl (Abcam ab72997); Nucleolin (Abcam ab22758); RNA polymerase II Ser2P (Abcam ab5095); Serca2 (Abcam ab2861); secondary AlexaFluor antibodies (Life Technologies)
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7

Muscle Protein Expression Analysis

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Muscle homogenates, purified isolated sarcolemmal vesicles and mitochondrial fractions were analyzed for total protein (BCA protein assay). Five micrograms of denatured protein from each sample were separated by electrophoresis on 7.5% and 12% SDS-polyacrylamide gels and transferred to a polyvinylidene difluoride membrane. Thereafter, membranes were blocked in 7.5% BSA and probed over night with commercially available antibodies against FAT/CD36 (rats; donated by Dr. Tandon; mice; Santa Cruz), FABPpm (donated by Dr. Calles-Escandon), COXIV (cytochrome c oxidase IV; Invitrogen), Cav-1 (caveolin-1; BD Biosciences), MCT1 (monocarboxylate transporter 1; Abcam), SERCA2 (sarcoplasmic/endoplasmic reticulum Ca2+-ATPase; Thermo Scientific), AMPKα total and AMPKα Thr172 phosphorylation (Cell Signaling), ACC (acetyl-CoA carboxylase) and ACC Ser79 phosphorylation (Cell Signaling), extracellular signal-regulated kinase (ERK1/2) total and Thr202/Tyr204 phosphorylation (Cell Signaling). All blots were quantified using enhanced chemiluminescence (Perkin Elmer, Woodbridge, ON) and quantified by densitometry (Alpha Innotech Fluorchem HD2, Fisher Scientific, Ottawa, ON).
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