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239 protocols using szx12

1

Visualizing Insect Cuticle Structures

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Images of Gld staining were obtained using the stereomicroscope SZX-12 (OLYMPUS, Tokyo, Japan) equipped with the CCD camera VB-7010 (KEYENCE, Osaka, Japan) or BX51 (OLYMPUS) equipped with the Spot RT Slider camera (Diagnostic Instruments, Sterling Heights, MI, USA). For fluorescence signals, the stereomicroscope SZX-12 (OLYMPUS) equipped with the CCD camera VB-7010 (KEYENCE), or the confocal laser scanning microscope FV-1000 (OLYMPUS) or FV-3000 (OLYMPUS) was used. The super-resolution mode of FV-3000 was used to observe the fine, filamentous chitin staining signal and Obst-E-a-GFP localization. We were not able to analyze Cpr11A-EGFP and ChtVis-Tomato signals clearly by the super-resolution mode due to severe signal decay. Videos were taken using SZX-12 (OLYMPUS) equipped with the CCD camera VB-7010 (KEYENCE). For electron microscopic observations, dissected and fixed larval cuticles were sent to the Hanaichi UltraStructure Research Institute (Aichi, Japan) for observation.
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2

Eggshell Pore Density Measurement

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The pore density of the three species eggshells was measured under a dissecting microscope (Olympus SZX12). Eggshell fragments (1.11 cm2, SD = 0.13) from the equatorial region of Brown Kiwi (13), Rowi (12), and Haast Tokoeka (10) were washed in an ultrasonic bath filled with deionized water to remove the plugs from the pores, let air dry, and stained with an alcohol‐based solution of Malachite green (1%). The eggshells were placed on paper towels, and two drops of the dye were applied to the inner eggshell surface. The eggshells were let to set to allow the dye to penetrate the pores without staining the cuticle (Figure 2c).
The eggshells were observed under a stereo microscope (Olympus SZX12) and photographed using an attached camera (Olympus S30), and then, the pores were individually counted using ImageJ to estimate pore density (pores/cm2). This means that pore density was estimated considering both the open and the plugged pores.
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3

Trypan Blue and DAB Staining for Leaf Death

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Trypan blue staining was used to detect cell death in leaves according to the methods of the previous study [46 (link)]. Fresh leaves were immersed in trypan blue solution (2.5 mg/mL trypan blue, 25% [w/v] lactic acid, 23% water-saturated phenol, 25% glycerol) at 70 °C for 10 min, then heated in boiling water for 2 min and incubated overnight at room temperature. Next, the sample was decolonized in a chloral hydrate solution (25 g in 10 mL of H2O) for three days. They were stored in 70% glycerol and analyzed with a stereomicroscope (Olympus szx12, Tokoyo, Japan). For DAB staining, leaf segments (approximately 5 cm in length) were immersed in DAB solution (1 mg/mL, pH = 3.8) for 8 h to react with the H2O2. They were placed in 75% ethanol, heated for 15 min and transferred to 10% glycerol for microscopic examination (Olympus szx12, Japan).
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4

Spider Diversity in Xishuangbanna, South Yunnan

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The material came from Xishuangbanna in South Yunnan (21°08'N–22°36'N, 99°56'E–101°50'E). The area belongs to the transitional zone from tropical South to subtropical East Asia (Zhu et al. 2004 ). The region has an area of 19,120 km2, with mountain ridges running north-south, and the elevation decreasing southwards. The current study is based on 10 years of collecting in Xishuangbanna. More details on the spider diversity in the area and collection methods can be found in Zheng et al. (2015) .
The specimens were preserved in 95% ethanol and were examined and measured with Olympus SZX12 and BX41 microscopes. Photos were taken with an Olympus C7070 wide zoom digital camera mounted on an Olympus SZX12 stereomicroscope. The images were processed with Helicon image stacking software. Vulvae were removed and digested with lactic acid or a 10% warm solution of

potassium hydroxide

(KOH)
. All measurements are in millimetres. References to figures in the cited papers are listed in lowercase type (fig. or figs); figures in this paper are noted with an initial capital (Fig. or Figs).
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5

Evaluating Antibiotic Sensitivity of T. virens

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The antibiotic sensitivity of T. virens wild-type (WT) to carboxin (Sigma Aldrich, United States) was evaluated using four different media: PDA medium, AY medium (144 mM acetate–acetic acid buffer at pH 6.5, 5 g l–1 yeast extract and 15 g l–1 bacteriological agar), EY medium (10 ml l–1 ethanol, 5 g l–1 yeast extract and 15 g l–1 bacteriological agar) and GY medium (10 g l–1 glucose, 5 g l–1 yeast extract and 15 g l–1 bacteriological agar) (Shima et al., 2009 (link)). carboxin resistance was tested on the different media mentioned above supplemented with different concentrations of carboxin (0, 50, 150, and 250 μg carboxin, diluted in DMSO per mL of medium). T. virens WT conidia (1 × 106) were homogeneously spread onto plates contacting the media mentioned above and incubated at 25°C for 7 days under a light/dark cycle. The samples were observed using a stereomicroscope (SZX12 Olympus, Japan) to confirm growth and germination inhibition. For each analysis, three replicates were used with different antibiotic concentrations.
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6

Thrips performance on herbivore-infested plants

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Nymphs of F. occidentalis were allowed to develop until the adult stage while feeding on sweet pepper plants with previous herbivory (either from thrips, aphids or parasitised aphids), and growing on the different soils. From the same plants that were infested for 48 h and a sample was taken for molecular analyses, the fourth entire leaf was used for the performance bioassay (see supplementary methods: Thrips performance). The leaf petiole from each plant was inserted in 2 ml 1.5% plant agar in a 90 mm Petri dish, to maintain leaf freshness. Using a fine paintbrush, five two-day-old nymphs of F. occidentalis were transferred to each Petri dish. In total, there were 144 plates (4 herbivore treatments × 3 soil treatments × 12 replicates) and 720 individuals of thrips (5 nymphs × 144 samples). The thrips were monitored daily, starting 4 days later and until they became adults (±7 days monitoring). Survival and length of adult body-size, measured from head until the last part of the abdomen by a digital microscope (SZX12 Olympus; Tokyo, Japan), was recorded (due to differences between males and females, body size measurements were analyzed separately for each sex). The bioassay was performed in a growth chamber at 22 °C, 40% relative humidity (RH) and a 16 h light and 8 h dark photo regime.
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7

Swarming Crustacean Collection from Korean Islands

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The specimens were collected using a light trap (Holmes and O’Connor 1988 (link); Kim 1992 ) from the Dokdo and Ulleung Islands (East Sea), Korea. The collected specimens were fixed in 80% ethanol, moved to the laboratory, and stored in 95% ethanol. The specimens were identified with a stereomicroscope (Model SZX12; Olympus, Japan). Photographs of the whole body were taken with a microscope equipped with a digital camera (eXcope T500; DIXI Science, Korea) and complemented by Helicon Focus v. 7.7.5 (Helicon Soft Ltd., Kharkiv, Ukraine). The body length was measured from the anterior tip of the carapace to the posterior end of pleonite 6. The lengths of the appendages were measured along the mid-line of each appendage. The whole body was drawn using a stereomicroscope (Olympus SZX12) with a drawing tube. Later, the samples were transferred to glycerin for dissection under a stereomicroscope (Olympus SZX12). Drawing of the appendages was performed using a light microscope (Model BX51; Olympus, Japan) with a drawing tube. Type specimens were deposited at the National Institute of Biological Resources (NIBR), Incheon, Korea.
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8

Skeletal Tissue Preparation and Staining

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Embryos at E15.5 or E18.5 were placed in PBS after euthanization. The skin, internal organs, and bubbles were removed from the body cavity, and then fixed in 95% ethanol. Cartilages were stained with Alcian blue and bones were stained with Alizarin S red following a standard protocol [13 ]. After clearing, samples were placed in 100% glycerol for long-term storage and imaging (Olym-pus SZX12, Olympus).
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9

Bending test of beetle flagella

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The beetles, C. rubiginosa, were collected in Jena, Germany, and kept in plastic boxes together with the plant Cirsium spp. (Asteraceae). Beetles collected in the wild were used for the following bending test. Other beetles collected in the field as well as beetles raised in laboratories were used for other experiments. Carbon dioxide–anesthetized beetles were dissected in phosphate-buffered saline (PBS; Carl Roth GmbH & Co. KG) under a stereomicroscope (Olympus SZX12, Olympus Corporation) when fresh flagella were essential. We then transferred the dissected flagella into distilled water that was further used as a medium for the bending test. Completing an experiment on a single individual took 2 to 3 hours. To avoid a change in the concentration of chemical substances in the medium during the experiment, we used distilled water as the medium instead of PBS. Because the flagellum largely consists of a chitinous cuticle material (25 (link)), its stiffness markedly changes depending on water content, similar to other cuticular structures (33 (link), 38 (link)).
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10

Analyzing UHMW-PE Surface Modifications

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The contact surface of one printed strand per UHMW-PE surface modification was analysed in the optical microscope Olympus SZX12 (Olympus Life Science Europe GmbH, Hamburg, Germany), at a magnification of 50× under reflected light, directly after testing their adhesion forces.
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