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34 protocols using anti p21

1

Immunoblotting Protocol for Cellular Proteins

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Cell extracts were prepared as described46 (link) and equivalent amounts resolved by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and electroblotted onto nitrocellulose for immunoblotting. Primary antibodies were: anti-LDH (Epitomics, Burlingame, CA, USA; antibody detects both LDH-A and LDH-B: see Figure 1b), anti-SIRT1 (Santa Cruz, Biotechnology, Santa Cruz, CA, USA), anti-p53 (Santa Cruz), anti-acetylated K382 p53 (Epitomics), anti-p21 (BD Biosciences, San Jose, CA, USA), anti-PDH-E1α (Abcam, Cambridge, UK), anti-phosphorylated S293 PDH-E1α (Novus Biologics, Littleton, CO, USA), antiphosphorylated T172 AMPK (Cell Signaling Technology, Beverly, MA, USA) antiphosphorylated S79 acetyl-CoA carboxylase (Cell Signalling Technology), anti-lamin A/C (Santa Cruz) and anti-actin (Chemicon International, Temecula, CA, USA).
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Protein Expression Analysis by Western Blotting

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The expression levels of specific proteins were determined by western blotting (Yun et al., 2020 (link)). The primary antibodies used are as follows: anti-SF3B4 (Cat. No. ab157117; Abcam, UK), anti-UBE4B (Cat. No. sc-100610; Santa Cruz Biotechnology, USA), anti-MDM2 (Cat. No. sc-965; Santa Cruz Biotechnology), anti-p53 (Cat. No. sc-126; Santa Cruz Biotechnology), anti-p27 (Cat. No. 610242; BD Biosciences), anti-p21 (Cat. No. ab109199; Abcam), anti-hemagglutinin (HA)-probe (Cat. No. sc-9133; Santa Cruz Biotechnology), and anti-β-Actin (Cat. No. A5441; Sigma-Aldrich). After incubation with horseradish peroxidase-conjugated anti-rabbit IgG (Cat. No. GTX213110-01; Genetex, USA) or anti-mouse IgG (Cat. No. GTX213111-01; Genetex), the immunoreactive bands were detected with luminol enhancer solution and peroxide solution (Promega, USA) or SuperSignal™ West Femto Maximum Sensitivity Substrate (Sigma-Aldrich). Densitometric analysis of the specific bands was performed using ImageJ version 1.51 (NIH, USA). For the cycloheximide (CHX; Sigma-Aldrich) chase assay, CHX was added for the indicated times before harvesting cell lysates.
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3

Western Blot Analysis of NF-κB Signaling

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Cells were harvested in RIPA buffer and briefly sonicated. Protein lysates were separated by 10% to 15% SDS–PAGE and transferred to a polyvinyl difluoride membrane (Immobilon) (Millipore, Billerica, MA, USA). Membranes were blocked in 0.1 M Tris (pH 7.5), 0.9% NaCl and 0.05% Tween-20 (TBS-T) with 5% nonfat dry milk. Membranes were incubated with anti-phospho-NFκB p65 (Ser536) or (ser15) (Cell Signaling), anti-phospho-IκB-α (Ser32) (Cell Signaling), anti-IKK-α (p45) (Millipore), anti-IKK-β (Millipore), anti-p16 (BD Biosciences), anti-p21 (BD Biosciences), anti-p53 (Ser15) (Cell Signaling), and anti-p53 (Cell Signaling, clone 7F5). GAPDH (Millipore) served as a loading control. The reaction was visualized using ECL SuperSignal West Pico Substrate (Pierce Biotechnology, Waltham, MA, USA).
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4

Protein Expression Analysis in Cells

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Western blot analysis was conducted using anti-phospho-AKT (ser473), anti-AKT, anti-FOXO3a, anti-phospho-S6K1 (Thr389), anti-S6K1 and anti-4E-BP1(Epitomics), anti-phospho-FOXO3a (ser253), and phospho-4E-BP1 (Ser65; Cell Signaling Technology), anti-p21, anti-cyclinD1 and anti-PTEN (BD PharMingen) antibodies.
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5

Western Blot Analysis of p53 and p21

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Cells were treated as indicated and washed once with cold PBS. Standard lysis buffer40 (link) was then added to each plate and plates were incubated on ice. Cell lysates were then collected using a plastic scraper and centrifuged at 14 000 r.p.m. at 4 °C for 10 min. The supernatant was removed and total protein concentration was then calculated using the Bio-Rad Protein Assay (Bio-Rad, Hercules, CA, USA). Samples were prepared and immunoblot analysis was carried out as described previously.41 (link) In brief, membranes were blocked in 5% milk for 1 h, then incubated overnight with anti-p53 DO-1 (Santa Cruz Biotechnology, Santa Cruz, CA, USA ), anti-phospho-p53 (Santa Cruz Biotechnology), anti-β actin (Cell Signaling) or anti-p21 (BD Pharmingen, San Jose, CA, USA) at 4°C. Membranes were washed with 0.1% Tween 20 in TBS and incubated for 1 h at room temperature with species-specific secondary antibody. Signal was generated using the Super-Signal West chemiluminescent system (Pierce Biotechnology, Rockford, IL, USA).
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Western Blot Antibodies for Cell Signaling

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Primary antibodies used for western blotting were: anti-actin (Abcam), anti-p53 (DO-1, Santa Cruz) and anti-p21 (BD Biosciences). Secondary antibodies were: goat anti-mouse IgG HRP conjugate (BioRad), or goat anti-rabbit IgG HRP conjugate (BioRad).
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Antibody and Chemical Sources for Cell Signaling

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The antibodies and chemicals were obtained from the following resources; anti-PARP (#556362), anti-XIAP (#610716), anti-FADD (#610399), anti-RIP1 (#610459), anti-p53 (#554147) and anti-p21 (#556430) antibodies (BD Biosciences, San Diego, CA, USA); anti-caspase-3 (#9662), anti-caspase-8 (#9746), anti-caspase-9 (#9508) and anti-Bid (#2002) antibodies (Cell signalling Technology, Beverly, MA, USA); anti-caspase-10 (M059-3) antibody (MBL, WOBURN, MA, USA); anti-Bcl-XS/L (sc-271121), anti-survivin (sc-17779), anti-TRAF2 (sc-876), anti-GFP (sc-9996) and anti-HA (sc-805) antibodies (Santa Cruz, CA, USA); anti-c-FLIP (ALX-804-961) antibody (Enzo Life Sciences, Farmingdale, NY, USA); anti-cIAP1/2 (#07-759) antibody (Upstate Biotech, Waltham, MA, USA); anti-DR5 (#ab181846) antibody (Abcam, Cambridge, UK); anti-DR4 (NB100-56528) antibody (Novus, Centennial, CO, USA); anti-TurboGFP (PA5-22688) antibody (Thermo scientific, Waltham, Massachusetts, USA); anti-actin (A2066), anti-flag (F3165, 1:2,000 dilution) antibodies (Sigma-Aldrich, St. Louis, MO, USA). the pan caspase inhibitor Z-VAD-FMK, MG-132, TPCA-1 (Calbiochem, San Diego, CA, USA); recombinant TNF (R & D Systems, Minneapolis, MN, USA); recombinant human TRAIL/Apo2 ligand (Peprotech, Rocky Hill, NJ, USA).
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8

Antibody Validation for Cell Signaling

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The following antibodies were used: anti-caspase-2 (clone 11B4; produced in-house [48 (link)] and available from Merck #MAB3507); anti-GFP (600-101-215, Rockland, Limerick, PA, USA); anti-MDM2 (OP46, EMD Millipore, Billerica, MA, USA); anti-p53 (sc-126, Santa Cruz Biotechnology, Dallas, TX, USA)); anti-p21 (5567430, BD Bioscience, Franklin Lakes, NJ, USA); anti-PARP (9542, Cell Signalling Technology, Beverly, MA, USA); anti-Bid (2002, Cell Signalling Technology); anti-cleaved caspase-3 (9664, Cell Signalling Technology); anti-HA (H6908, Sigma-Aldrich, St. Louis, MO, USA); anti-GST (G7781, Sigma-Aldrich); anti-Phospho-Histone H3 (9701, Cell Signalling Technology); anti-His (ab18184, Abcam, Cambridge, MA, USA) and anti-β-actin (A1978, Sigma-Aldrich).
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9

Oridonin Attenuates Fibroblast Activation

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All cell culture mediums and trypsin were purchased from Life Technology Corp. (Carlsbad, CA). Oridonin and antibody against α-smooth muscle actin (α-SMA) (Cat#5228) were purchased from Sigma-Aldrich Co. LLC. (St. Louis, MO). TGF-β1 was purchased from R&D Systems Inc. (Minneapolis, MN). Propidium iodide was from MP Biomedicals, LLC (Solon, OH). Antibodies against Fibronectin (sc-6952) and Cdk4 (sc-749) were purchased from Santa Cruz Biotechnology Inc (Santa Cruz, CA). Anti-Collagen Type I polyclonal antibody (600-401-103) was from Rockland Immunochemicals Inc. (Gilbertsville, PA). GAPDH antibody (10R-G109A) was from Fitzgerald Industries (Concord, MA). Anti-p21 (Cat#556431) and p16 (Cat#551153) were from BD Biosciences (San Jose, CA). Anti-p53 (Cat#2527), cleaved PARP (Cat#5625), cleaved caspase-9 (Cat#9505) and phospho-Smad2/3 (Cat#8828) were from Cell Signaling Technology Inc. (Danvers, MA).
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10

Western Blot Analysis of Cell Signaling

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Cultured MOSE cells were washed with cold PBS and then lysed in SDS gel loading buffer. Lysates were collected and denatured in boiling water bath for 10 minutes. The protein extracts were separated on 8% or 10% SDS polyacrylamide gels, transferred onto nitrocellulose membrane, and subjected to immunoblotting according to standard procedures. The primary antibodies used were: anti–N-cadherin (mouse monoclonal, clone: 32/N-Cadherin, BD Bioscience), anti–E-cadherin (mouse monoclonal, clone: 34/E-Cadherin, BD Bioscience), anti–beta-catenin (mouse monoclonal, clone: 14/Beta-Catenin, BD Bioscience), anti-COX1 (#160105, #160110, Cayman Chemical), anti-COX2 (#160106, Cayman Chemical), anti–claudin-3 (Invitrogen), anti-PCNA (SC56, Santa Cruz), anti-p21 (mouse monoclonal, clone: SXM30, BD Bioscience), anti–phospho-AKT (#9276, Cell Signaling), anti-AKT (#9272, Cell Signaling), anti–phospho-Erk1/2 (mouse monoclonal, clone: E10, Cell Signaling), anti-Erk1/2 (#9102, Cell Signaling), and anti–beta-actin (clone AC-15, Sigma). Chemoluminescence detection was performed using the SuperSignal West Extended Duration Substrate detection kit (Pierce Biotech).
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