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Phenol red free matrigel

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Phenol red-free Matrigel is a soluble basement membrane matrix derived from Engelbreth-Holm-Swarm (EHS) mouse sarcoma cells. It is used as a cell culture substrate that supports the growth and differentiation of various cell types. The phenol red-free formulation allows for the use of colorimetric or fluorometric assays without interference from the phenol red indicator.

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31 protocols using phenol red free matrigel

1

In vivo Matrigel Angiogenesis Assay

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Investigation has been conducted in accordance with the ethical standards and according to the Declaration of Helsinki and the Italian law (Legislative Decree no.26, 4 March 2014), which acknowledges the European Directive 2010/63/UE, being approved by the authors’ institutional review board and the Italian Ministry of Health. All efforts were made to minimize the number of animals used and their suffering. In vivo Matrigel angiogenesis assay was performed as previously described [32 (link)]. C57 black mice (20–25 g) were kept in temperature- and humidity-controlled rooms (at 22° C) with lights on from 7 am to 7 pm, water and food available ad libitum. VEGF (300 ng) in presence/absence of Ni(SalPipNONO) (0.5 mM) was diluted in growth factor and phenol red-free Matrigel (Becton Dickinson, Franklin Lakes, NJ, USA) on ice. Mice were subcutaneously injected in the dorsal midline region with 0.4 ml of Matrigel. After 10 days, mice were euthanized and implants harvested. Plugs were re-suspended in 1 ml of Drabkin′s reagent (Sigma Aldrich, St. Louis, MO, USA) for 18 h on ice and hemoglobin concentration was determined by absorbance at 540 nm and compared with a standard curve (Sigma Aldrich, St. Louis, MO, USA).
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2

Endothelial Progenitor Cell Tube Formation

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Phenol red-free Matrigel (Becton & Dickinson, Franklin lakes, USA) was added to a prechilled 24-well plate. The Matrigel was then solidified by incubation at 37°C for 1 hour. The BM-derived EPCs (200.000 cells/well) were suspended in 500 μL serum-free EGM-2 medium and seeded into each well. The formation of the tube-like network was photographed (CCD-Live Cell Microscope system with a Zeiss AxioCam Black and White camera (AxiocamMRm)), with temperature controlled live cell chamber (Zeiss, Sliedrecht, The Netherlands), every 20 minutes for 20 hours after seeding. Image processing was performed using Zeiss ZEN software (Zeiss).
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3

Angiogenic Potential of PDLSCs and HUVECs

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Animal experiments were approved by the Institutional Animal Care and Use Committee (IACUC) (SNU-1010046). PDLSCs and HUVECs were mixed to be a total of 2.0 × 106 cells at ratios of 1:0, 1:1, and 0:1 in 200 μl of ice-cold Phenol Red-free Matrigel (BD Bioscience, USA). The mixture was injected into 8-week-old immunodeficient mice (NIH-bg-nu-xid, Harlan Sprague-Dawley, USA). A mouse was injected by one Matrigel implant subcutaneously using a 25-gauge needle. To inhibit the SDF-1α and CXCR4 axis, 10 μM of AMD3100 (Sigma–Aldrich) was added into the Matrigel plug before injection.
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4

Trophoblast Outgrowth Assay Protocol

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Explant cultures were performed as previously described (34 (link), 40 (link)). Briefly, villous explants with potential EVT columns were carefully dissected and positioned on Transwell inserts (Millipore, Billerica, MA) pre-coated with 200 μL of undiluted phenol red-free Matrigel (BD Biosciences, Bedford, MA). Explants were left overnight to attach to the Matrigel, at 37°C with 3% O2 and 5% CO2, before adding serum-free DMEM-F12 medium supplemented with 100 U/mL of penicillin, 100 U/mL of streptomycin, 100 μg/mL Normacin™. After 2 days of culture, villous tips were examined under the dissecting microscope for successful EVT outgrowths. All successful explants were selected for treatment with 200 nM oligomers (Table 3). Explants were photographed immediately after adding treatment, and subsequently at 48 h, using a Leica DFC400 camera attached to a dissecting microscope. ImageJ was used to measure the area of EVT outgrowth. Specifically, total outgrowth area was calculated by subtracting the area at the end point with the initial area upon treatment. Each experiment was designed with a minimum of four replicates, and was repeated on three different placentas.
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5

Matrigel Plug Angiogenesis Assay

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Serum-free conditioned media (SFCM) were collected from 48 hrs cultures and centrifuges to remove cells. SFCM was then mixed with phenol-red-free matrigel (2:3 proportion, total 0.5 ml; BD Biosciences). Subcutaneous (s.c.) injection in mice was performed and the mice were killed after 8 days and the matrigel plugs were extracted for haemoglobin content (QuantiChromhaemoglobin assay; BioAssay Systems), and immunohistochemistry for CD31 antibody.
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6

Subcutaneous Matrigel Plug Angiogenesis Assay

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Male BALB/c nude mice (18-20 g; 6-8-weeks old) were purchased from the Center for Animal Experiment of Wuhan University in pressurized ventilated cages according to institutional regulations. All studies were approved and overseen by the Institutional Animal Care and Use Committee, Center for Animal Experiment, Wuhan
University. In all, 2 × 10 6 HemSCs (or 1.6 × 10 6 HemSCs and 0.4 × 10 6 THP-1 cells) were trypsinized and resuspended in 200 μl phenol red-free Matrigel (BD Biosciences, San Jose, CA). The mixture was injected into the flaps of nude mice subcutaneously (eight animals for each group). Animals were killed and Matrigel plugs were collected at 7, 14, 28, and 56 days. The Matrigel plugs were fixed and embedded for H&E staining and immunohistochemisty, or isolated in TRIzol (Invitrogen, Carlsbad, CA) for RNA extraction and real-time PCR analysis (Applied Biosystems, Carlsbad, CA). The samples were validated by H&E staining and immunohistochemisty as shown in Supplementary Figure 10 online.
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7

Subcutaneous Matrigel Implantation in Mice

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All animal experiments were approved by the appropriate Institutional Review Boards and conducted in accordance with the ‘National Institute of Health Guide for the Care and Use of Laboratory Animals’ (NIH publication No. 80–23, revised in 1996). A total of 3 × 106 cells was resuspended in 200 μl of ice-cold Phenol Red-free Matrigel (BD Bioscience, USA). Implants of Matrigel alone were served as controls. The mixture was transplanted subcutaneously into the dorsal surface of 6-week-old immunocompromised beige mice (NIH-bg-nu-xid, Harlan Sprague-Dawley, USA) using a 25-gauge needle. At 4 and 7 days after injection, mice were sacrificed in a CO2 chamber and Matrigel implants were removed for histological analysis.
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8

Xenograft Mouse Tumor Model Protocol

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All animal experiments were conducted in compliance with Institutional Animal Care and Use Committee guidelines established by Wake Forest University Health Science's or Genentech's Institutional Animal Care and Use Committee. Both are accredited by the Association for Assessment and Accreditation of Laboratory Animal Care (AAALAC). Female NIH Swiss mice (weight, 20-22 g; age, 6-8 weeks) were obtained from Jackson Laboratories (Bar Harbor, ME). NCR nude mice of age 10 weeks were obtained from Taconic (Oxnard, CA). Mice were inoculated on the right flank with 5 × 106 SKOV3 cells (ATCC, Manassas, VA) in a 50:50 ratio of HBSS and phenol red free Matrigel (BD Biosciences, San Jose, CA). Tumor growth was evaluated manually with calipers on a weekly basis. Tumor volume was calculated using a standard formula (volume = 0.52 × [width]2 × [length]).
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9

Investigating miR-29b-mediated Tumor Regression

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All studies involving mice were undertaken after receiving ethical approval from Boston Children’s Hospital Animal Care and Use Committee. ERL4 cells stably expressing Ctrl-ZIP or miR-29b-ZIP (2.0 × 106) were mixed with phenol-red free Matrigel (BD Biosciences, USA) 1:1 (v/v) to obtain a final volume of 150 μl. The cell/Matrigel mix was injected unilaterally into 7–8-week-old female athymic Balbc nu/nu mice (Charles River, USA) using a 21G needle. Once the tumors become palpable, the width and length of palpable tumors were measured with digital calipers. Tumor volume was calculated using the equation (length) × (width)2/2. When tumors reached 300–400 mm3 in volume, mice were treated with rapamycin (3 mg/kg), every 2 days for a total of 3 treatments or every 2 days for a total of 9 treatments over 3 weeks. Four hours following the last treatment, tumors were harvested, snap frozen then stored at −80 °C for RNA and protein analysis. For all the animal studies, we have chosen to use at least three mice per group to ensure adequate power to detect difference between groups. All animal studies were blinded and conducted under the guidelines of Boston Children’s Hospital Animal Care and Use Committee.
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10

Zr-89 ATPS mAb Biodistribution in Xenograft Mice

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Animal experiments were performed according to protocols approved by the Care of Experimental Animals Committee (IACUC No. 2018-0018, approved date—18 June 2018). To induce xenografts, 1 × 107 MDA-MB-231 or PC3 cells in phenol red-free Matrigel (BD Biosciences, Franklin Lakes, NJ, USA) were injected subcutaneously into the right flank of 6-week-old female or male Balb/c nude mice (Charles River Laboratories Japan, Inc., Yokohama, Japan) and grown for 2 weeks. For biodistribution analysis, 1.85 MBq Zr-89 ATPS mAb was administered intravenously (n = 5 for each time point), and then at 4, 24, and 48 h after injection, the mice were anesthetized, sacrificed, and dissected. The amount of radioactivity in the blood, heart, lungs, liver, spleen, stomach, kidneys, intestine, muscle, and tumor was measured using a gamma counter and the percentage of the injected dose per gram tissue was calculated. For the inhibition study (n = 3), 60 μg cold ATPS mAb was co-injected with 1.85 MBq (2.4 μg) Zr-89 ATPS mAb in mice bearing MDA-MB-231 tumors and then organs were removed at 24 h after injection. As a control, wild-type mice were injected with 1.85 MBq Zr-89 oxalate, an unlabeled form of Zr-89, and then organs were removed at 24 h after injection.
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