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19 protocols using bx ucb

1

Histological Assessment of Vascular Inflammation

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C57BL/6 mice were injected i.v. with 20 µg LPS. After 48 h, vascular tissues and spleen were harvested and fixed with 4% paraformaldehyde in phosphate buffer. Paraffin-embedded samples were sectioned at 5 µm, and then stained with hematoxylin-eosin (HE) and Weigert (resorcin-fuschin) staining for histological analysis, rabbit anti-mouse CD45 (GB11066, Servicebio, Wuhan, China) for leukocytes, rabbit antimouse CD3 (14-0114-85, Invitrogen) for T cells, and rabbit anti-mouse CD11c (GB11059, Servicebio) for DCs. The nucleus was stained by DAPI. Different histological stains were observed using an Olympus microscope (BX-UCB, Olympus Corporation, Tokyo, Japan), and elastic lamellae disruptions were counted (×40 objective).
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2

Microscopy Techniques for Neuronal Analysis

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Overview images were captured using an Olympus BX61 motorized microscope with Olympus BX-UCB hardware (VS120 slide scanner) and processed using Olympus OlyVIA software (Olympus). Confocal imaging of individual nuclei for quantification of Brs3-positive neurons, pSTAT3-positive neurons and Fos-positive neurons was performed with an upright Zeiss Axio Observer Z1 microscope with a 10X objective, Zeiss 700 confocal hardware, and Zen software (2012; Zeiss). Z-stacks (9–12 ?m) of slices processed for fluorescence in situ hybridization were taken using the same confocal with a 40X objective and collapsed into a maximum intensity projection using Zen software. Images to illustrate expression of tdTomato, ChR2, DREADD, GCaMP or GFP were taken with VS120 slidescanner or Zeiss 700 confocal. Images were minimally processed to adjust brightness and contrast.
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3

Histopathological Examination of Pancreatic Tissue

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For histopathological examinations, pancreatic tissues were quickly isolated from each experimental group. Pancreatic tissues were preserved in 10% buffered formaldehyde. Preserved tissues were routinely processed, then embedded in paraffin, and cut into 4 μm thick sections; they were mounted on slides for hematoxylin and eosin staining. All sections were examined using light microscope (Olympus BX61-USA) connected to motorized controller unit (Olympus bx-ucb-USA) and photographed by a camera (Olympus DP72-USA).
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4

Histological Analysis of Mouse Kidneys

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Kidney tissues excised from each mouse were fixed in 10% buffered formaldehyde immediately after removal from the animals. Fixed tissues were routinely processed, then embedded in paraffin, and cut into 4 μm thick sections; they were mounted on slides for hematoxylin and eosin staining. Qualitative examinations of prepared tissues and the obtaining of their photos were carried out using a light microscope (Olympus BX61- USA) connected to motorized controller unit (Olympus bx-ucb, USA) and photographed by a camera (Olympus DP72, USA).
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5

Histological Analysis of Testis

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At the end of 4 weeks animals were euthanized under deep ether anaesthesia. Abdomen and pelvic cavities were opened, to remove the testis. It was immersed in 10 % neutral buffered formalin 24 h after which it cut transversely and processed for paraffin sections 5-μm thick stained by hematoxylin and Eosin (H&E) for general structure examination using a light microscope (Olympus BX61- USA) connected to motorized controller unit (Olympus bx-ucb, USA) and photographed by a camera (Olympus DP72, USA).
For Ki 67 immunostaining, “another serial sections of 5-μm paraffin tissue were cut, dewaxed, and rehydrated in xylene and distilled water. Antigen retrieval was then carried out in a microwave oven. 3 % hydrogen peroxide was used to quench endogenous peroxidase activity in sections for 30 min. at room temperature, followed by 15 min. of blocking with 5 % bovine serum. The sections were then incubated overnight at 4 °C in a humidified room with specific primary antibodies against Ki-67 (GB11010; Wuhan Saiweier Biological Technology, China). After being washed with PB, the sections were treated with secondary antibody and stained with 3, 3′-diaminobenzidine after being rinsed with PB. Hematoxylin was used to counterstain the slices, which were then washed in tap water”. Micrographs of (IHC) were examined under a microscope (Zhao et al, 2018 (link)).
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6

Fluorescent Microscopy Visualization Protocol

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Most fluorescent staining was visualised under an Olympus BX60 microscope equipped with epifluorescent optics and a camera (Applied Imaging, Inc.). In the case of TIFs analysis, an Olympus BX61 epifluorescence microscope with motorized x-y stage (BX-UCB, Olympus) was used to acquire images as a Z-stack (total of 7 planes of 2.11 μm each). The fluorochromes were visualised through simple filters and images were captured and analysed using Cytovision software (Applied Imaging, Inc.).
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7

Transwell Invasion Assay Protocol

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Transwell invasion assays were conducted using the Boyden chamber method and polycarbonate membranes with an 8-μm pore size (Falcon, New York, NY, USA, 353097). First, fibronectin (Corning, New York, NY, USA, 354008) is coated outside of the membrane at a concentration of 100 μg/mL for 1 h. The inside of the membrane was coated with 10% diluted Matrigel® (Corning, 354234) in PBS for 1 h. DNA- or siRNA-transfected cells, according to 2.9, were seeded in triplicate at a density of 2.5 × 104 cells into the chamber with 200 µL serum-free DMEM, and DMEM containing 10% FBS was placed into the lower chambers. After MCF-7 and MDA-MB231 cells were incubated for 48 h and 12 h in humidified 5% CO2 in a 37 °C incubator, respectively, invaded cells on the lower surface of the membrane filter were fixed with 4% formaldehyde (Sigma, SHGJ2885) diluted in PBS. After PBS washing, the membrane was stained with DAPI (Invitrogen, D1306). The image was obtained using Olympus BX-UCB. Then the cell counted at least five randomly selected microscopic fields (×20) per filter.
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8

Mitochondrial Morphology in Fibroblasts

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Fibroblasts were grown in DMEM-Glu and stained with 250 nM MitoTracker Red CMXRos (Invitrogen). Cells were examined with a confocal microscope (40×/100×) (Olympus BX-UCB). All micrographs were taken under the same conditions and the fluorescence intensity of the mitochondria relative to the cell volume was calculated in 200 cells using the ImageJ software (NIH, Bethesda, MD).
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9

Angiogenic Activity Evaluation of ECFCs and SPCs

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For evaluation of angiogenic activity, ECFCs and SPCs were labeled with green fluorescent dye and red fluorescent dye (Sigma, St. Louis, MO). ECFCs and SPCs (2 × 104 cells/well) were seeded onto 48-well culture plates coated with 50 μl of Matrigel (BD Biosciences) and incubated for 18 hr. The capillary tube-formations were visualized by fluorescence and quantified by counting the number of tubes using an inverted fluorescence microscope (Olympus BX-UCB; Olympus, Melville, NY). The tube thickness was measured in five random microscopic fields per subject using Image J software. Assays were performed in triplicate. We tested four different combinations of ECFCs and SPCs derived from healthy normal subjects and MMD patients.
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10

Microscopy Techniques for Neuronal Analysis

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Overview images were captured using an Olympus BX61 motorized microscope with Olympus BX-UCB hardware (VS120 slide scanner) and processed using Olympus OlyVIA software (Olympus). Confocal imaging of individual nuclei for quantification of Brs3-positive neurons, pSTAT3-positive neurons and Fos-positive neurons was performed with an upright Zeiss Axio Observer Z1 microscope with a 10X objective, Zeiss 700 confocal hardware, and Zen software (2012; Zeiss). Z-stacks (9–12 ?m) of slices processed for fluorescence in situ hybridization were taken using the same confocal with a 40X objective and collapsed into a maximum intensity projection using Zen software. Images to illustrate expression of tdTomato, ChR2, DREADD, GCaMP or GFP were taken with VS120 slidescanner or Zeiss 700 confocal. Images were minimally processed to adjust brightness and contrast.
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