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4 protocols using sc 376845

1

Colocalization of β5i and RIG-I

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To explore the colocalisation of β5i and RIG-I, double-label immunostaining was performed. After blocking with 5% bovine serum albumin in PBST at room temperature for 1 hour, the samples were treated with mouse anti-RIG-I monoclonal antibody (1:50, sc-376845, Santa Cruz Biotechnology) and rabbit anti-β5i monoclonal antibody (1:2000, ab180606, Abcam) overnight at 4°C, followed by three washes with PBS (10 min each wash). Next, the samples were treated with Alexa Fluor 594-conjugated goat anti-mouse IgG (1:200, 8890, Cell Signaling Technology) and Alexa Fluor 488-conjugated goat anti-rabbit IgG (1:200, 4412, Cell Signaling Technology), which were used as the secondary antibodies, in a dark chamber for 1 hour, followed by three washes with PBST. After counterstaining with DAPI (Beyotime, Shanghai, China), the slides were mounted with coverslips. To clarify whether β5i is expressed in regenerative myocytes, we performed double-label immunostaining using rabbit anti-β5i monoclonal antibody (1:2000, ab180606, Abcam) and mouse anti-NCAM1 monoclonal antibody (1:500, ab6123, Abcam), following the same procedure mentioned above. In addition, double-label immunofluorescence staining using rabbit anti-β5i monoclonal antibody and mouse anti-MxA monoclonal antibody (1:100, sc-166412, Santa Cruz) was performed following the above procedure.
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2

Immunoprecipitation of MAVS and RIG-I

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Mouse lung tissues and A549 ​cells were lysed in RIPA buffer as mentioned for Western blotting. The lysates were centrifuged at 12,000×g and 4 ​°C for 15 ​min. Supernatants were collected, and 400 ​μg lysate samples were incubated with 2 ​μg of an anti-MAVS primary antibody overnight at 4 ​°C in a rotator. Then, 20 ​μL Protein A/G agarose (Beyotime Biotechnology, Shanghai, China) was added and incubated for an additional 3 ​h at 4 ​°C, after which the lysates were washed 5 times with PBS and subjected to Western blot analysis with primary antibodies specific for MAVS (Abcam, Source: rabbit, Catalog: ab31334, Abcam, Cambridge, MA, USA) and RIG-I (Santa Cruz, Source: mouse, Catalog: sc-376845, Santa Cruz, CA, USA).
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3

Western Blotting for CSFV Protein Detection

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Proteins were separated by SDS-PAGE (4 to 20% polyacrylamide; Thermo Fisher) and transferred to Amersham Protran 0.45-µm-pore nitrocellulose membranes. Membranes were blocked with 5 % (wt/vol) dried skimmed milk in phosphate-buffered saline (PBS) containing 0.5 % Tween 20. Anti-CSFV Npro rabbit serum (DS14) was generated in-house by inoculating rabbits with the peptide KTNKQKPMGVEEPVYDATGKPLFGDPS, corresponding to N-terminal residues 11 to 37 (66 (link)). Primary monoclonal antibodies (MAbs) recognizing γ-tubulin (T6557; Sigma), Mx1 (Ab79609; Abcam), RIG-I (sc-376845; Santa Cruz Biotechnology), and CSFV E2 (WH303; APHA) and polyclonal Abs recognizing ISG15 (sc-50366; Santa Cruz Biotechnology), Bax (2772; Cell Signaling Technology), cleaved caspase-3 (9664; Cell Signaling Technology), GFP (Ab290; Abcam), and FLAG (R1180; Acris) were all used as indicated. Bound primary antibodies were detected by horseradish peroxidase-conjugated goat anti-mouse (Promega) or goat anti-rabbit (Promega) secondary antibodies.
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4

Immunoblotting Protocol for Innate Immunity Proteins

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For immunoblotting, cells were lysed in RIPA buffer (150 mM NaCl, 10 mM Tris, pH 7.2, 0.1% SDS, 1.0% Triton X-100, 5 mM EDTA, pH 8.0) containing protease and phosphatase inhibitors (Roche Applied Science, Indianapolis, IN, USA), separated by SDS-PAGE, transferred to nitrocellulose membranes (Whatman, Germany) and blocked in EveryBlot Blocking Buffer (cat. no. 12010020, Bio-Rad Laboratories, Hercules, CA, USA). Membranes were blotted with primary antibodies followed by horseradish peroxidase (HRP)-conjugated secondary antibodies antibody (Vector, USA). Primary antibodies targeting cGAS (1:1000; #15102), STING (1:1000; #13647), TREX1 (1:1000; #15107) were from Cell Signaling. p16(Ink4a) (1:200; sc-377412) and RIG-I (1:100; sc-376845) were from Santa Cruz Biotechnology, SIRT1 (1:1000; ab12193) was from Abcam, IRF-3 (1:2000; GTX133768) and TLR-9 (1:1000; NBP2-24729) from GeneTex and Novus Biologicals respectively. Immunoreactive proteins were visualized using Clarity Western ECL Substrate (cat. no. 1705060S, Bio-Rad Laboratories, Hercules, CA, USA) and quantified using ImageJ2 software [50 ]. Membranes were incubated with anti β-actin (1:3000; #3700, Cell Signalling Technology) as normalizer. Full length uncropped original western blots are available as a Supplemental Material file.
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