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Nova pak

Manufactured by Waters Corporation
Sourced in United States

The Nova-Pak is a high-performance liquid chromatography (HPLC) column developed and manufactured by Waters Corporation. It is designed for the separation and analysis of a wide range of chemical compounds. The Nova-Pak column offers reliable and consistent performance for various analytical applications.

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14 protocols using nova pak

1

Quantifying Dikarya Fungal Biomass

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Dikarya fungal biomass was quantified from samples (5 g from ingrowth bags, 1 g from soil) using the fungal biomarker ergosterol, the most common sterol of Ascomycota and Basidiomycota and commonly used to estimate ECM fungal biomass in ingrowth bag studies (Wallander et al. 2013). Using established methods (Nylund and Wallander 1992), esterified ergosterol was extracted with 10% KOH in MeOH, filtered through a 0.45‐μm teflon filter, and 50 μL of each sample was analyzed using high performance liquid chromatography, with a C18 reverse‐phase column (Nova‐Pak; 3.9 × 150 mm; Waters, Milford, Connecticut, USA) preceded by a C18 reverse‐phase guard column (Nova‐Pak; 3.9 × 20 mm; Waters). The ergosterol peak was detected at 282 nm using an UV detector. Fungal biomass was determined from ergosterol concentrations using a conversion factor of 3 μg ergosterol/mg dry sample (Salmanowicz and Nylund 1988) and a correction factor (1/0.62) to compensate for unextracted ergosterol (Montgomery et al. 2000). Carbon content was estimated from fungal biomass data based on approx. 45% C concentration (Taylor et al. 2003). For more methodological considerations on the use of ergosterol for quantification of fungal biomass, see Appendix S1.
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2

Fungal Biomass Quantification in Soil

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For soil samples in 2017, total fungal biomass was quantified from 0.3 g of a soil sample, using the fungal biomarker ergosterol. Ergosterol is the most common sterol of Ascomycota and Basidiomycota. Using established methods (Nylund and Wallander, 1992 (link)), esterified ergosterol was extracted with 10% KOH in MeOH, filtered through a 0.45-μm Teflon filter, and 50 μl of each sample was analyzed, using high performance liquid chromatography, with a C18 reverse-phase column (Nova-Pak; 3.9 × 150 mm; Waters, Milford, CT, USA), preceded by a C18 reverse-phase guard column (Nova-Pak; 3.9 × 20 mm; Waters) as in Cheeke et al. (2017 (link)). The ergosterol peak was detected at 282 nm, using a UV detector. Fungal biomass was determined from ergosterol concentrations, using a conversion factor of a 3-μg ergosterol mg−1 dry sample (Salmanowicz and Nylund, 1988 (link)) and a correction factor (1/0.62) to compensate for unextracted ergosterol (Montgomery et al., 2000 (link)).
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3

HPLC Quantification of PTX and CUR

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The quantification of PTX and CUR was performed using HPLC (Shimadzu, Sydney, Australia). The mobile phase consisting of a mixture of 70:30 v/v acetonitrile:water and 0.1% v/v trifluoroacetic acid was used for HPLC analysis and operated at the flow rate 1.5 mL/min with a photodiode array detector (PDA) at 25 °C using a C18 column (Nova-Pak, 150 × 4.6 mm, Waters, MA, USA). The injection volume for each sample was 100 µL and the concentrations of the drugs were analyzed via a UV wavelength of 430 nm and 227 nm for CUR and PTX, respectively. The retention time for CUR was 2.6 min and for PTX was 2.7 min. The limit of detection (LOD) values for CUR and PTX were 10 ng/mL and 10 ng/mL, respectively.
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4

Quantification of Polyamines in Seeds

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The concentrations of PAs were measured according to the method of Gao [34 (link)] with slight modification. Briefly, 0.2 g of fresh seeds with treatments was homogenized with 2 mL of 5% (w/v) cold HClO4. Then the seeds were incubated in ice for 1 h, centrifuged at 12,000 rpm for 30 min at 4 °C, and then the supernatant was stored at −80 °C for PAs measurements. Thereafter, 1 mL of 2 mM NaOH and 10 μL of benzoyl chloride were added to 0.5 mL of the obtained supernatant and the mixture was then vortex-mixed vigorously and incubated in 37 °C water for 20 min. Then, 2 mL of saturated NaCl solution and 2 mL of diethylether were added to the mixture. After 1500× g centrifugation for 5 min at 4 °C, 1 mL of the ether phase was obtained and evaporated with a warm air-stream. The dried materials were dissolved in 100 μL methanol and its filtration through a 0.22 μm filter was subjected to reading on an HPLC, which included a 45 mm × 250 mm, 5 μm particle size reverse-phase (C18) column (Waters Nova-Pak), and a Waters 2487 dual λ absorbance detector. The mobile phases consisted of methanol-water (64:36, v/v) at a flow rate of 1.0 mL/min. Three PAs standard samples of Put, Spd, and Spm were prepared at different concentrations for the development of standard curves.
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5

Extraction and Analysis of LMWOAs

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The extraction of LMWOAs was carried out based on the method described by Cayún et al. [18 (link)] with minor modifications; 0.5 g of rhizosphere soil was crushed and dissolved in 1 mL of 0.2 M calcium chloride, shaken, and centrifuged (Centurion Scientific Ltd, Bosham, UK) at 4000× g at 4 °C for 15 min. Afterward, the supernatant was filtered through 0.45 μm filters. The extraction procedure was repeated three times.
Chromatographic separation was performed using high-performance liquid chromatography with diode array detection (HPLC-DAD) (Shimadzu, Tokyo, Japan) equipped with a quaternary pump (LC-20AD), a degassing unit (DGU-20A5R), a column oven (CTO-20A), an autosampler (SIL-20A), and a UV–Vis diode array detector (SPD-M20A) using a C18 column (Eclipse, 250 × 4.6 mm, 5 µm) and a C18 precolumn (NovaPak, Waters, 22 × 3.9 mm, 4 µm). The mobile phase was 0.2 N phosphoric acid (pH 2.1) at a flow rate of 1.0 mL min−1 with isocratic elution at 30 °C. Detection was performed at 210 nm with an analysis time of 15 min using oxalic acid (y = 12,295x + 11,179, detection limit (DL): 1.90 mg L−1, quantification limit (QL): 6.34 mg L−1, linear range (LR): 6.34 to 100 mg L−1) and citric acid (y = 1274.2x + 3763.9, DL: 0.20 mg L−1, QL: 0.66 mg L−1, LR: 0.66 to 500 mg L−1) as external calibration standards.
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6

HPLC Analysis of Polyphenol Content

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Individual polyphenols were determined by using a reversed-phase HPLC (Waters 2695, Milford, MA, USA), which was equipped with a C18 column (Nova-Pak, 150 × 3.9 mm, 4 μm, Waters), a 600 E multi-solvent delivery system, a Waters U6K sampler and a Waters 2996 photodiode array detector (DAD) [22 (link)]. Briefly, a gradient elution of polyphenols was performed using a binary solvent system (acetonitrile and acidified distilled water (pH 2 with orthophosphoric acid)) under isothermal conditions (25 °C). A detection wavelength range of 210–550 nm was used. The identification of the single compounds was confirmed by comparing their retention times and UV-DAD spectra with those of the corresponding standards, as well as with those reported in the literature [25 (link)]. The amount of each compound (expressed as area unit (AU) × 106), was calculated before and after digestion.
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7

Pigment Extraction and HPLC Analysis

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Plant material (50–100 mg) was weighed and frozen in liquid nitrogen, then ground using a 2-mL sample tube grinding apparatus (Yasui-kikai Corp., Osaka, Japan). The powdered samples were suspended with 0.1 ml of acetone chilled at −20°C and centrifuged at 10,000 × g (4°C) for 10 min. The residues were re-extracted with 0.1 ml of acetone chilled at −20°C and repeated immediately. After combining the supernatants, the volume was measured and stored in darkness at 4°C until HPLC analysis. Pigments were separated on a reverse phase C18 column (150 × 2.1 mm; 4-μm particle diameter Nova-Pak®, Waters, Milford, MA, USA) using an HPLC system (LC-VP; Shimadzu Co. Ltd.) equipped with a fluorescence detector (RF-10AXL; Shimadzu Co. Ltd.). Standard curves were constructed according to the authentic standards purchased from Frontier Scientific Inc. (Logan, UT, USA). HPLC conditions were performed according to methods described previously67 (link).
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8

Peptide Liquid Chromatography-Mass Spectrometry

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Liquid chromatography-mass spectrometry (LC/MS) was developed on a Waters Alliance model 2690 system and model 996 photodiode array detector (Waters; Eschborn, Germany) controlled by a Micromass model ZMD mass detector (Micromass; Altrincham, UK). Peptide samples were applied to a 150 × 2.1 mm C18 column, 3.5 µm particle size, 60 Å pore size (Nova-Pak, Waters, Milford, MA, USA). Elution was performed with 0.1% TFA:H2O as solvent A and 60% acetonitrile:0.1% TFA:H2O as solvent B, at a flow rate of 0.4 mL·min−1, using a linear gradient from 5% to 95% for solvent B for 30 min at 220 nm and a mass range of 500–3930 Da.
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9

Kiwifruit Anthocyanin Extraction and HPLC Quantification

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Kiwifruit samples [5 g fresh weight] from S1 to S7 were ground in liquid nitrogen before anthocyanin extraction using 5:1 (v/w) ethanol/H2O/acetic acid (80:20:1 v/v/v) in an Ultra-Turrax homogenizer for 30 minutes. Homogenates were held for 24 hours at 4°C in the dark. The supernatant was then collected, filtered with 0.45 μm filter paper, and retained for HPLC analysis [39 (link)]. Extracts were analyzed by reversed-phase HPLC using an Alliance 2695 instrument equipped with a 996 photodiode array detector (Waters, USA). Separation was achieved with a 150 ×3.9 mm i.d., 4 μm, C18 Aqua column (Nova-pak, Waters), and a binary solvent system of (A) 1% aqueous formic acid (v/v) and (B) acetonitrile. Anthocyanin was monitored at 530nm, and chromatographic peaks were identified by comparison with authentic standards of cyaniding 3-O-galactoside (Chromadex USA, CAS No. 27661-36-5) and cyaniding 3-O-glucoside (WAKO, Jap, CAS No. 7084-24-4).
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10

HPLC Analysis of Fluorescent Compounds

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A high performance liquid chromatography (HPLC) system consisting of a Waters e2695 Separation Module and a Waters 2475 Multi λ Fluorescence Detector was used with the excitation and emission wavelengths being 470 nm and 585 nm, respectively. Chromatographic separation was performed using a Nova-Pak® C18 column (3.9 × 150 mm i.d., 4 μm, Waters, USA) using the chromatographic process described previously 76 (link).
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