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29 protocols using ab40776

1

Autophagy Pathway Protein Expression

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The expressions of ALKBH5, ATG7 (Autophagy related 7), ATG5(Autophagy related 5), Beclin1, ULK1 (Serine/Threonine-Protein Kinase ULK1), PI3KC3, p-MTOR (Mammalian target of rapamycin), and Actin proteins were analyzed by WB. The primary antibodies included monoclonal rabbit anti-ALKBH5 (Abcam, ab234528), rabbit monoclonal to ATG7 (Abcam, ab52472), rabbit monoclonal to ATG5 (Abcam, ab109490), rabbit polyclonal to Beclin1 (Abcam, ab62557), rabbit polyclonal to ULK1 (Abcam, ab203207), rabbit monoclonal to PI3KC3 (Abcam, ab40776), rabbit monoclonal to p-mTOR (Abcam, ab109268). Monoclonal mouse anti-β-actin (Abcam, ab8226) was used as an internal control to evaluate the band density on a gel imaging system.
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2

Elucidating Mesangial Cell Pathways

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A human mesangial cell line (HMC cell line, FH0241) was obtained from FuHeng Biology Co. (Shanghai, China). DHT (116064-77-8, purity ≥ 98%) was acquired from Krre Technology Co. (Beijing, China). Mannitol (69-65-8) was obtained from Macklin Biochemical Co. (Shanghai, China). The following antibodies: GAPDH (1:1000, ab8245), α-smooth muscle actin (1:1000, ab7817), Collagen I (1:1000, ab260043), Fibronectin (1:1000, ab2413), PI3KCA (1:1000, ab40776), PI3K (1:1000, ab191606), p-PI3K (1:1000, ab182651), AKT (1:1000, ab179463), and p-AKT (1:1000, ab192623) were bought from Abcam Co. (Cambridge, United Kingdom). Goat Anti-Rabbit IgG H&L (HRP, A0208), Rabbit Anti-Mouse IgG H&L (HRP, A0216), and Rabbit Anti-Mouse IgG H&L (Alexa Fluor 488, A0428) were purchased from Beyotime (Shanghai, China). DAPI Staining Solution (C1006) and Cell Counting Kit-8 (C0038) were also obtained from Beyotime (Shanghai, China). Glucose, Trypsin, Dulbecco’s Modified Eagle’s Medium (DMEM), and fetal bovine serum (FBS) were purchased from GIBCO. The Mouse Albumin ELISA Kit (ab207620) was purchased from Abcam.
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3

Western Blot and Immunofluorescence Protocols

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WB experiments were performed as previously reported [69 (link),93 (link)] using the following antibodies: anti-β-Actin antibody (4967; Cell Signaling Technology, Danvers, Massachusetts), anti-NICD antibody (ab83232; Abcam, Cambridge, UK), anti-Myc antibody (06–549; Millipore), anti-Flag antibody (F7425; Sigma-Aldrich), anti-DLL4 antibody (ab7280; Abcam), anti-JAG1 antibody (ab7771; Abcam), anti-Notch1 antibody (3608; Cell Signaling Technology), anti-Erk antibody (9102; Cell Signaling Technology), anti-p-Erk antibody (9101; Cell Signaling Technology), anti-p-AKT antibody (4060; Cell Signaling Technology), and anti-AKT antibody (9272; Cell Signaling Technology). Quantification of protein level using gray analysis (Gel-Pro analyzer). Immunofluorescence experiments were performed as previously reported [94 (link)] using the following antibodies: anti-Notch1 antibody (3608; Cell Signaling Technology), anti-Notch1 antibody (3447; Cell Signaling Technology), anti-DLL4 antibody (ab7280; Abcam), anti-JAG1 antibody (ab7771; Abcam), anti-LAMP1 antibody (15665; Cell Signaling Technology), anti-EEA1 antibody (610457; BD Biosciences, Franklin Lakes, New Jersey), anti-APPL1 antibody (3858; Cell Signaling Technology), anti-AKT antibody (2920; Cell Signaling Technology), anti-AKT antibody (9272; Cell Signaling Technology), and anti-PIK3CA antibody (ab40776; Abcam).
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4

Western Blot Analysis of Bcl-2 Pathway

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Transfected cells were lysed by RIPA lysis buffer (Beyotime). Then the lysate was separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis, and transferred to a polyvinylidene fluoride membranes. Subsequently, the membranes were incubated with primary antibody against B-cell lymphoma-2 (Bcl-2) (1:1000, ab692, Abcam, Cambridge, MA, USA), BCL2-associated X protein (Bax) (1:1000, ab32503, Abcam), phosphorylated (p)-phosphoinositide 3-kinase (p-PI3K) (1:1000, ab182651, Abcam), PI3K (1:1000, ab40776, Abcam), p-protein kinase B (p-AKT) (1:1,000, 9271, Cell Signaling Technology, Boston, MA, USA), AKT (1:1,000, 9272, Cell Signaling Technology), as well as β-Actin (1:1,000, 4967, Cell Signaling Technology). After interaction with secondary HRP-conjugated antibody (1:1000, ab9482, Abcam). Experiments were performed three times, and immunoreactive bands were visualized using electrochemiluminescence.
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5

Western Blot Analysis of PI3K/AKT Signaling

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Proteins were isolated using RIPA lysis buffer (Beyotime, Shanghai, China ) and quantified by a bicinchoninic acid (BCA) method following the recommendations of the manufacturer. Then, extracted protein was separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). Subsequently, the membranes were interacted with primary antibodies against phosphorylated (p-) PI3K (1:1000, ab182651, Abcam, Cambridge, MA, USA), PI3K (1:1000, ab40776, Abcam), p-AKT (1:1000, 9271, Cell Signaling Technology, Boston, MA, USA), AKT (1:1000, 9272, Cell Signaling Technology), and β-actin (1:1000, 4967, Cell Signaling Technology), and followed by incubation with HRP-conjugated secondary antibody (1:1000; ab9482; Abcam). Finally, protein signals were visualized using an ECL method. Experiments were performed three times.
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6

Immunoblot Analysis of Lung Tissue

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Immunoblot analyses of lung tissue were performed on total lysates as described by Ding et al. (2019) (link) using phospho-signal transducer and activator of transcription (STAT) 3 (p-STAT3; catalog number, ab76315; Abcam, Cambridge, United Kingdom), STAT3 (ab68153; Abcam), phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha (PIK3CA; ab40776; Abcam), phospho-mitogen-activated protein kinase (MAPK) 1 (p-MAPK1; ab201015; Abcam), MAPK1 (ab184699; Abcam), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 60004-1-Ig, Proteintech) as primary antibodies and then incubation with the corresponding secondary antibodies. Protein bands were detected by an electrochemiluminescence reagent (NCM Biotech, Beijing, China). The intensity of protein bands was analyzed using Image-Pro Plus (Media Cybernetics, Rockville, ML, United States) and presented as the ratio to GAPDH.
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7

Western Blot Analysis of Signaling Proteins

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We collected cells and lysed them in RIPA lysis buffer. Aliquots of protein were then loaded and separated on SDS-PAGE gels and transferred to a polyvinylidene difluoride membrane. After blocking, the membrane was incubated with the appropriate primary antibody, followed by incubation with the corresponding secondary antibody. The primary antibodies and dilution factors were as follows: Rabbit anti-PARN (ab1883331, 1:1000 dilution; Abcam, United States), rabbit anti-CDK1 (ab133327, 1:3000 dilution, Abcam, United States), rabbit anti-PIK3CA (ab40776, 1:1000 dilution, Abcam, United States), rabbit anti-AKT [4685, 1:1000 dilution, Cell Signaling Technology (CST), United States], rabbit anti-CCND1 (2978, 1:1000 dilution, CST, United States), rabbit anti-P-AKT (AF887-sp, 1:500 dilution, R&D Systems, United States), and rabbit anti-GAPDH (AP0063, 1:3000 dilution, Bioworld, United States).
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8

Ubiquitinated Protein Enrichment and Analysis

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Plasmids with His‐tagged ubiquitin, Flag‐NEDD4L, and HA‐PIK3CA were transfected into HEK293T cells. In order to enrich the ubiquitinated protein, the cell lysate was incubated with Talon beads (GE Healthcare). After incubating for 2 h at 4°C, ubiquitinated proteins were eluted with 20 ml of eluent (5 × SDS buffer, 0.05 M ethylenediaminetetraacetate [EDTA], and 1% SDS lysis buffer). Ubiquitinated proteins were subjected to immunoblotting with PIK3CA (ab40776; 1: 1000; Abcam) or HA antibody (ab9110; 1: 2000, Abcam).
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9

Spinal Cord Tissue Analysis: Immunohistochemistry

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The rats were perfused with 200 mL of saline followed by 200 mL of 0.1 M phosphate buffer (pH 7.3) containing 4% paraformaldehyde. The L4-L5 spinal cord was removed, postfixed in 4% paraformaldehyde for 24 h, and allowed to equilibrate in 30% sucrose in phosphate-buffered saline (PBS) overnight at 4°C. Transverse spinal sections (4–6 μm) were cut using a cryostat and collected in 0.01 M PBS, pH 7.3. After washing with PBS, the tissue was penetrated with 0.3% Triton X-100 and primary antibodies for rabbit anti-rat Iba1, BDNF, p-ERK, and PI3K (rabbit anti-Iba1, ab178680, 1 : 100, Abcam, USA; rabbit anti-BDNF, ab108319, 1 : 500, Abcam, USA; rabbit anti-p-ERK, #4370, 1 : 200, Cell Signaling Technology, USA; rabbit anti-PI3K, ab40776, 1 : 200, Abcam, USA). Next, the slides were covered with secondary antibodies containing 1 μM 4′-6-diamidino-2-phenylinedole (Sigma, USA). Some sections stained for BDNF, p-ERK, and PI3K were double labeled using cell-type-specific Abs for microglia (Iba1). The nuclei were stained with DAPI (5 μg/mL; Beyotime, USA). Fluorescence signal was detected using a fluorescence microscope (Olympus, Japan), images were captured, and signal co-localization was measured using MetaMorph (Molecular Devices, USA). The area fraction was quantified using Image J software (Rawak Software, Inc., Germany).
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10

Exosome Effects on Myotube Signaling

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Differentiated C2C12 myotubes grown in 25-cm2 culture-flasks (containing 5 ml DMEM) were treated with KPC-exosomes (0 μg, 1 μg, 2 μg, 4 μg), MPDC-exosomes (4 μg) and insulin (10−7 M: 0 min, 5 min, 15 min, 30 min).
Procedures for protein extractions and immunoblots were carried out according to standard protocols. Nuclear and cytoplasmic proteins were extracted using the NE-PER Nuclear and Cytoplasmic Extraction Reagents (78833, Thermo Scientific, Waltham, MA, USA). Primary antibodies against PTEN (ab32199, Abcam), IRR (ab40782, Abcam), IRS-1 (#3407, CST), PI3 Kinase p110α (ab40776, Abcam), PI3 Kinase p110β (ab151549, Abcam), PI3 Kinase p110γ (#5405, CST), PI3 Kinase p110δ (ab109006, Abcam), Phospho-Akt (Ser473) (#4060, CST), Akt (#2920, CST), FOXO1 (#2880,CST), Phospho-FoxO1(Ser256)(#9461, CST), Glut4 (#2213, CST), Lamin A + C (ab108922, Abcam), β-actin (sc-47778, Santa Cruz Biotechnology), and LC3B (ab192890, Abcam) were used.
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