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21 protocols using autopol 3 polarimeter

1

Spectroscopic Analysis of Organic Compounds

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Specific optical rotations were collected on a Rudolph Research Analytical (Autopol III) polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). IR spectra were measured on a JASCO FT/IR-4100 spectrophotometer (JASCO Corporation, Tokyo, Japan). The 1D and 2D NMR spectra were taken in CDCl3 using a Bruker 600 MHz spectrometer (Bruker BioSpin GmbH, Rheinstetten, Germany) at 297.1 K. 1H NMR spectra were collected after 64–128 scans, and 13C NMR spectra were collected at a range of 10,000–15,000 scans depending on the sample concentrations. The mixing time for NOESY experiments was set as 0.3 s. Chemical shifts were reported in parts per million relative to CHCl3 residue (δH 7.26, δC 77.1) in CDCl3. High resolution mass-spectra were obtained on a Sciex X500R Q-TOF spectrometer (Framingham, MA, USA) equipped with an ESI source. MPLC was performed using the TELEDYNE ISCO CombiFlash Companion with the TELEDYNE ISCO RediSep Normal-phase Silica Flash Column (Teledyne ISCO, Lincoln, NE, USA). HPLC was performed on a PrimeLine Binary pump (Analytical Scientific Instruments, Inc., El Sobrante, CA, USA) utilizing silica columns (YMC-Pack Silica, 250 × 10 mm I.D., or 250 × 4.6 mm I.D., 5 µm; YMC Co. Ltd., Kyoto, Japan), the Shodex RI-101 (Shoko Scientific Co. Ltd., Yokohama, Japan), or the UV-M201.
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2

Analytical Characterization of Natural Products

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Optical rotations were measured with a Rudolph Autopol III polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). Shimadzu UV-2550 spectrometer (Beckman, Brea, CA, USA) was used for scanning UV spectroscopy. IR spectra were obtained on a Tensor 27 spectrometer, as KBr pellets (Thermo, Pittsburgh, PA, USA). NMR spectra were recorded on an AV-500 spectrometer (Bruker, Bremen, Germany) with TMS (Tetramethylsilane) as an internal standard. HR-ESI-MS were performed on an API QSTAR Pulsar mass spectrometer (Billerica, MA, USA). Silica gel (200–300 mesh, Qingdao Marine Chemical Inc., Qingdao, China), RP-18 (40–70 mm, Fuji Silysia Chemical Ltd., Kasugai Aichi, Japan) and Sephadex LH-20 (GE Healthcare, Uppsala, Sweden) were used for column chromatography (CC). Semipreparative HPLC (Agilent 1100, Agilent Technologies Inc., Santa Clara, CA, USA) was performed on an Agilent 1100 liquid chromatograph with a Zorbax SB-C18, 9.4 mm × 25 cm, column. Fractions were monitored by TLC and spots were visualized by heating after spraying with 5% H2SO4 in ethanol.
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3

Characterization of Organic Compounds

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Reagents were purchased from Fisher Scientific (Waltham, MA, USA) unless otherwise noted. Optical rotations were measured on a Rudolph Research Analytical Autopol III polarimeter (Hackettstown, NJ, USA). IR spectra were obtained using a JASCO 4100 FT-IR spectrophotometer (Oklahoma City, OK, USA). High resolution mass analyses were performed using an Agilent 6230 TOF LC/MS mass spectrometer (Santa Clara, CA, USA) with a dual ESI and APCI source. Standard 1D and 2D NMR spectra were recorded on a Bruker 400 MHz spectrometer (Billerica, MA, USA). Proton and carbon chemical shifts are reported in ppm and referenced with the 1H and 13C signals of solvents. TLC separations were performed using Whatman silica gel 60 F254 aluminum backed TLC plates. HPLC separations were performed with an Agilent 1200 instrument (Santa Clara, CA, USA) with a PDA detector system.
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4

Comprehensive Characterization of Compounds

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The compounds were characterized by 1H and 13C nuclear magnetic resonance (NMR). NMR spectra were recorded on a Bruker (Billerica, MA) DRX-600 spectrometer using tetramethylsilane as an internal standard. The compounds were analyzed by electrospray mass spectrometry (MS) on a Thermo Electron (Waltham, MA) (Finnigan) LCQ classic ion trap mass spectrometer. Direct infusion (10 μL/min) was applied to about 50 μM solutions of the samples in MeOH/H2O 1:1 2% AcOH. Standard electrospray ionization conditions were applied, and the masses of protonated molecules [MH]+ were measured. Optical rotations were measured on a Rudolph Research Analytical (Hackettstown, NJ) AutoPol III polarimeter using the Na-D line. The purity of the compounds was determined by thin-layer chromatography on silica gel plates (Analtech, Newark, DE; 02521), solvent system MeOH/CHCl3 1:4. Melting points are uncorrected. The purity of the compounds was also checked by analytical reversed-phase high-performance liquid chromatography using an Amersham Pharmacia Biotech (Piscataway, NJ) Äkta Basic 10F with a ODS-A C18 (120 Å, 5 μm, 250 mm × 4.6 mm) column (Omnicrom; YMC Europe GmbH, Dinslaken, Germany) monitored at 220 and 254 nm and by high-resolution mass spectral analysis (Supporting Information).
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5

Instrumental Analytical Techniques for Compound Characterization

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Optical rotations were measured on an Autopol III polarimeter #A7214 (Rudolph Research Analytical, Hackettstown, NJ, USA) equipped with a 5 cm cell. Infrared spectra were recorded on a NICOLET 5700 spectrometer (Thermo Electron Corp, Waltham, MA, USA) and ultraviolet spectra were also recorded on a Scinco UVS-2100 instrument (Scinco, Seoul, Korea). 1H- and 13C-NMR spectra were recorded on an Avance DPX-600 spectrometer (Bruker, Billerica, MA, USA). FAB-MS were measured on a JMS-AX505WA mass spectrometer (JEOL, Tokyo, Japan). Solvents used in partitioning were first grade products of Dae Jung & Metals Co. (Siheung, Korea). HPLC grade solvents from Brudick & Jackson (Muskegon, MI, USA) were used in adsorption chromatography, TLC and HPLC. Younglin SDV 30 plus HPLC’s with Younglin M 720 UV detectors were used for isolation of compounds (YL Instruments, Anyang, Korea). NMR solvents were obtained from Cambridge Isotope Laboratories (CIL), Inc. (Tewksbury, MA, USA).
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6

Characterization of Microbial Metabolites

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The 1D and 2D NMR spectra were recorded utilizing a Bruker 600 MHz spectrometer (Bruker BioSpin GmbH, Rheinstetten, Germany). UV–Vis spectra were measured by a Shimadzu UV-1650PC spectrophotometer (Shimadzu Corporation, Kyoto, Japan). IR spectra were obtained by a JASCO FT/IR-4100 spectrophotometer (JASCO Corporation, Tokyo, Japan). High-resolution ESIMS experiments were conducted with a hybrid ion trap time-of-flight mass spectrometer (Shimadzu LC/MS-IT-TOF, Kyoto, Japan). HPLC was conducted using a PrimeLine Binary pump (Analytical Scientific Instruments, Inc., El Sobrante, CA, USA) and a RI-101 detector (Shoko Scientific Co., Ltd., Yokohama, Japan). Semi-preparative HPLC was performed by an ODS column (YMC-Pack-ODS-A, 250 × 10 mm i.d., 5 µM, Kyoto, Japan). Optical rotations were obtained by a Rudolph Research Analytical Autopol III polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). All solvents were either HPLC grade or distilled prior to use. Mass culture was conducted using a 100-L fermenter (Fermentec Co., Ltd., Cheongju, Republic of Korea).
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7

Detailed Analytical Techniques for Compound Characterization

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A Rudolph Research Autopol III polarimeter was used for optical rotations (Rudolph Research Analytical, Hackettstown, NJ, USA). A Thermo Nicolet 6700 FT-IR microscope instrument was used for the IR spectra (Thermo Electron Corporation, Waltham, MA, USA). A TU-1900 ultraviolet spectrometer was used for the UV spectra (Beijing Persee General Instrument Co., Ltd., Beijing, China). For HR-ESI-MS, an Agilent-6210-LC/TOF mass spectrometer was used (Agilent Technologies, Inc., Santa Clara, CA, USA). For NMR, a Bruker Avance 600 spectrometer was used (Bruker Corporation, Billerica, MA, USA). An Agilent Xcalibur Atlas Gemini Ultra diffractometer was used for single-crystal X-ray diffraction (Agilent Technologies, Inc., Santa Clara, CA, USA). For melting points, the X-5 microscopic melting point apparatus was used (uncorrected) (Beijing Tech Instrument Co., Ltd., Beijing, China). MCI CHP 20P gel (75–150 μm, Tokyo, Japan), silica gel (300–400 mesh; Qingdao Marine Chemical Co., Ltd., Qingdao, China), ODS AQ C-18 gel (50 μm; YMC Co., Ltd., Kyoto, Japan), and Toyopearl HW-40F gel (Tosoh Corporation, Tokyo, Japan), were used for CC. Precoated GF254 silica gel plates (Qingdao Marine Chemical Co., Ltd., Qingdao, China) were used for thin layer chromatography. A SpectraMax Plus 384 microplate reader (Molecular Devices, San Jose, CA, USA) was used in the AGS and BGUS inhibition bioassays.
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8

Characterization of Natural Compounds

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Optical rotations were measured on a Rudolph Research Autopol III polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). IR spectra were obtained on a Thermo Nicolet 6700 FT-IR microscope instrument (Thermo Electron Corporation, Waltham, MA, USA). The UV spectra were obtained on a TU-1900 ultraviolet spectrometer (Beijing Persee General Instrument Co., Ltd., Beijing, China). HR-ESI-MS was performed on an Agilent-6210-LC/TOF mass spectrometer (Agilent Technologies, Inc., Santa Clara, CA, USA). The NMR spectra were obtained on a Bruker Avance 600 spectrometer (Bruker Corporation, Billerica, MA, USA). Silica gel (300–400 mesh; Qingdao Marine Chemical Co., Ltd., Qingdao, China), MCI CHP 20P gel (75–150 μm, Tokyo, Japan), ODS AQ C-18 gel (50 μm; YMC Co., Ltd., Kyoto, Japan), and Sephadex LH-20 gel (GE Healthcare, Uppsala, Sweden) were used for CC. Precoated GF254 Silica gel plates (Qingdao Marine Chemical Co., Ltd., Qingdao, China) were used for thin layer chromatography. Semi-preparative HPLC was carried out on an Agilent ZORBAX Eclipse XDB-C18 column (5 μm, 250 × 9.4 mm) with a Shimadzu LC-20AT system by eluting with CH3OH/H2O solvent system at 3 mL/min. A SpectraMax Plus 384 microplate reader (Molecular Devices, San Jose, CA, USA) was used in the AGS inhibition assay.
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9

Comprehensive NMR and Spectroscopic Analysis

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The 1D (1H and 13C) and 2D (COSY, HSQC, HMBC, and NOESY) NMR spectra were acquired by a Bruker 600 MHz spectrometer (Bruker BioSpin GmbH, Rheinstetten, Germany). Specific optical rotations were obtained in methanol at 25 °C on a Rudolph Research Analytical (Autopol III) polarimeter (Rudolph Research Analytical, Hackettstown, NJ, USA). UV-visible spectra were acquired by a Shimadzu UV-1650PC spectrophotometer in 1 mm quartz cells (Shimadzu Corporation, Kyoto, Japan). IR spectra were collected on a JASCO FT/IR-4100 spectrophotometer (JASCO Corporation, Tokyo, Japan). High-resolution ESIMS were recorded on a hybrid ion-trap time-of-flight mass spectrometer (Shimadzu LC/MS-IT-TOF). HPLC was conducted using a semi-prep ODS column (YMC-Triart C18, 250 × 10 mm i.d, 5 µm) and an analytical ODS column (YMC-Triart C18, 250 × 4.6 mm i.d, 5 µm) (YMC Corporation, Kyoto, Japan). All the reagents were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany), and the organic solvents and water were distilled prior to use.
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10

Spectroscopic Characterization of Compounds

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1H and 13C NMR spectra were recorded in CD3OD on an AVANCE 600 spectrometer (Bruker, Rheinspettem, Germany) at 600 and 150 MHz, respectively, using tetramethylsilane as an internal standard, and chemical shifts are given in δ (ppm). UV spectra were obtained in methanol on a UVICON 933/934 spectrophotometer (Kontron, Milan, Italy), mass spectra on GMS-600 W or JMS-700 spectrometer (Jeol, Tokyo, Japan), and FT-IR spectra on a Nicolet Magna 550 series II spectrometer (Midac, Irvine, CA). Optical rotation was measured with an Autopol III polarimeter (Rudolph Research Analytical, Flanders, NJ). Silica gel 60 (0.063–0.2 mm) (Merck, Darmstadt, Germany) was used for column chromatography. Merck precoated silica gel plates (Kieselgel 60 F254) were used for analytical thin-layer chromatography (TLC). Merck silica gel 60 RP-18 F254S plates (for RP-TLC) and an Agilent 1200 series high-performance liquid chromatograph (HPLC) (Santa Clara, CA) were used for isolation of active principles.
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