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11 protocols using ab214666

1

Western Blot Analysis of Key Proteins

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Protein extracts were separated and transferred to a polyvinylidene fluoride membrane. First, the primary antibody was added to the membrane for overnight incubation at 37 °C. Then, horseradish peroxidase-labeled secondary antibody (ab205718, goat anti-rabbit or goat anti-mouse, 1:10,000, Abcam) was added for further incubation followed by visualization using enhanced chemiluminescence (Shanghai Baoman Biotechnology, Shanghai, China). The primary antibodies procured from Abcam (CA, UK) included KLF4 (ab215036, 1:1000, rabbit; ab214666, 1:1000, rabbit), α‑SMA (ab32575, 1:1000–1:5000, rabbit), PCNA (ab92552, 1:1000–1:10000, rabbit), MMP2 (ab92536, 1:1000–1:5000, rabbit), MMP3 (ab52915, 1:1000–1:20000, rabbit), MMP9 (ab76003, 1:1000–1:20000, rabbit), p-p38 (ab4822, 1:1000, rabbit), p38 (ab170099, 1:1000–1:5000, rabbit). In addition, GAPDH (ab181602, 1:10,000, rabbit, Abcam) was used as an internal reference, and the gel image analysis software was used for quantitative analysis.46 (link)
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2

Immunofluorescence Analysis of Aortic Tissue

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Slides of aortic tissue were fixed with 4% paraformaldehyde for 30 min at room temperature and permeabilized in 0.1% PBS-Triton for 30 min. The samples were blocked in 5% BSA/PBS/0.1% Triton-X 100 for 1 h and then incubated with the primary antibodies anti-Kruppel-like factor 4 (Klf4, ab214666), anti-neural cell adhesion molecule (Ncam1, ab28486), anti-Ki67 (ab15580), anti-alpha-smooth muscle actin (ab7817) (all from Abcam, USA), and anti-vitronectin (Vtn, MA5-24083, Invitrogen, USA). After several PBS washes, the slides were incubated for 2 h at room temperature with the secondary antibodies AF647 donkey anti-mouse and AF568 donkey anti-rabbit (Invitrogen, USA). Immunofluorescence was assessed using a Zeiss LSM 880 confocal laser-scanning microscope (Carl Zeiss Microscopy, Jena, Germany). The fluorescence values were measured with ImageJ software (developed at the National Institutes of Health). At least 100 cells were analyzed for each group.
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3

Co-immunoprecipitation of USP10 and KLF4

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The interaction between USP10 and KLF4 was detected by Co-IP. BMSCs were lysed using Co-IP lysate to extract proteins. Protein supernatants were incubated with Normal rabbit IgG or USP10 (AB70895, Abcam), and SKP2 (AB214666, Abcam) antibodies at 4℃ overnight with rotation. The Co-IP lysate was then added to Protein A/G agarose beads, mixed, and centrifuged to collect the precipitate. Following antibody incubation, the cell lysate was fully incubated with agarose beads for 2 h at 4℃ to allow antibody coupling to the beads. The agarose beads were washed using Co-IP lysate buffer, and WB subsequently analyzed the coupling product.
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4

Co-immunoprecipitation of USP10 and KLF4

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The interaction between USP10 and KLF4 was detected by Co-IP. BMSCs were lysed using Co-IP lysate to extract proteins. Protein supernatants were incubated with Normal rabbit IgG or USP10 (AB70895, Abcam), and SKP2 (AB214666, Abcam) antibodies at 4℃ overnight with rotation. The Co-IP lysate was then added to Protein A/G agarose beads, mixed, and centrifuged to collect the precipitate. Following antibody incubation, the cell lysate was fully incubated with agarose beads for 2 h at 4℃ to allow antibody coupling to the beads. The agarose beads were washed using Co-IP lysate buffer, and WB subsequently analyzed the coupling product.
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5

Western Blot Validation of Protein Expression

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Western blots were performed to verify the expression of proteins in control and IPF group. Total protein extracts (20 μg) were separated on 10% SDS-PAGE and transferred to nitrocellulose membranes. The blots were probed with anti-KLF4 (Abcam, Ab214666), anti-TERT (Abcam, Ab32020) and anti-GAPDH (Abcam, Ab8245) antibodies. The signal was detected by enhanced automatic chemiluminescence camera (Tanon 5200).
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6

Western Blot Quantification of KLF4 Protein

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The total proteins of the cells were isolated by a radioimmunoprecipitation assay buffer (P0013E, Beyotime, Shanghai, China) and then quantified by a bicinchoninic acid protein assay kit (P0012, Beyotime, Shanghai, China). After the loading buffer was added, the proteins were denatured in boiling water. The protein samples were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred onto a polyvinyl fluoride membrane (Millipore, Bedford, MA, United States). After that, the membrane was blocked in 5% skim milk for 30 min at room temperature. Next, the proteins were incubated with primary antibodies anti-KLF4 (ab214666, Abcam, Cambridge, United Kingdom) and anti-GAPDH (ab8245, Abcam, Cambridge, United Kingdom) overnight at 4°C and then incubated with the secondary antibody (ab6789, Abcam, Cambridge, United Kingdom) at room temperature for 1 h. Lastly, the protein bands were visualized using ECL chemiluminescence solution (P0018FS, Beyotime, Shanghai, China), and then, the gray value of the bands was quantified by Image LabTM Software.
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7

Immunostaining of Cerebral Arteries

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After dewaxing and dehydrating, the paraffin sections of the basilar cerebral arteries of rats were subjected to antigen retrieval, blocked with normal goat serum (C-0005, Shanghai Haoran Biotechnology Co., Ltd, Shanghai, China), and immunostained with primary antibodies against KLF4 (ab214666, 1:1000, rabbit, Abcam) and α‑SMA (ab32575, 1:500, rabbit, Abcam) at 4 °C overnight. In addition, the sections were incubated with fluorescent secondary antibody (ab150075, 1:200–1:1000, Abcam) for 60 min in the dark and added a fluorescence decay-resistant medium.50 (link) The fluorescence intensity was observed under a fluorescence microscope.
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8

ChIP-seq protocol for KLF4

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Cells were fixed with 1% formaldehyde solution for 10 min, quenched with 125 mM glycine for 5 min and fragmented into 200–500 bp length fragments by sonication. The cell lysate was subsequently incubated with anti‐KLF4 (Abcam, 1:50, ab214666) or anti‐IgG (Abcam, 1:1000, ab171870) at 4°C overnight. Immunoprecipitated DNAs were purified and analysed by gel electrophoresis.
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9

Chromatin Immunoprecipitation Assay Protocol

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The ChIP assay was conducted according to the instructions of the ChIP assay kit (Thermo Fisher Scientific, Waltham, MA, USA). Pancreatic tissues were lysed using radioimmunoprecipitation
assay buffer (Sigma, St. Louis, MO, USA), fixed with 1% methanal to crosslink DNA and protein, and processed with ultrasonic treatment to fragment DNA. Then, chromatins were incubated with
antibodies against KLF4 (ab214666, Abcam) and IgG (ab172730, Abcam) at 4°C overnight and purified using a fragmented DNA purification assay kit (Intron Biotechnology, Seoul, Korea), followed
by RT-qPCR analysis. The primer of the STAT5 promoter is shown in Table 2.
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10

Western Blot Analysis of Extracellular Matrix Proteins

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Cell pellets were lysed with RIPA buffer (AR0102, BOSTER) with protease inhibitor added on ice. The protein concentration was determined according to the instructions of the Pierce™ BCA Protein Assay Kit (23227, Thermo). Equal amounts of protein were loaded onto 10% SDS-PAGE gels, separated by electrophoresis and transferred onto PVDF membranes (IPVH00010, Millipore). After blocking with 5% skim milk in TBST for 1.5 hours at room temperature, the membranes were incubated with rabbit anti-human Col1 (ab138492, Abcam), rabbit anti-human Col3 (ab184993, Abcam), rabbit anti-human KLF4 (ab214666, Abcam), rabbit anti-human α-SMA (ab7871, Abcam), rabbit anti-human BMP4 (ab124715, Abcam), and rabbit anti-human GAPDH (60004-1-lg, Proteintech) antibodies overnight at 4 °C. The next day, the membranes were incubated with IgG-HRP secondary antibody (A0208, Beyotime) for 1 h at 37 °C. Traces of immunoreactivity on the membrane were detected by ECL reagent (WBULS0100, Millipore) on a Fluor Chem FC system (Alpha Innotech). Bands were quantitated by ImageJ software.
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