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7 protocols using minidawn treos multi angle light scattering

1

SEC-MALS Analysis of ρ-Rof Complex

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SEC-MALS was performed in reaction buffer (20 mM Tris-HCl, pH 8.0, 120 mM KOAc, 5 mM Mg(OAc)2, 2 mM DTT). 1 mg/ml of ρ were mixed with 2 mg/ml of Rof and incubated at 32 °C for 10 min. 60 μl of the mixture were loaded on a Superose 200 increase 10/300 GL column (Cytiva) and chromatographed on HPLC system (Agilent) coupled to a miniDAWN TREOS multi-angle light scattering and a RefractoMax 520 detector system (Wyatt Technologies). Prior to measurements, a system calibration was performed using BSA (Sigma-Aldrich). ASTRA 6.1 software was used for data analysis and molecular mass determination.
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2

Characterizing PAMD and PAMD-Ch by GPC

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The molar mass of PAMD was analyzed by gel permeation chromatography (GPC) operated in 0.3 M sodium acetate buffer (pH 5) using Agilent 1260 Infinity LC system equipped with a miniDAWN TREOS multi-angle light scattering (MALS) detector and a Optilab T-rEX refractive index detector from Wyatt Technology (Santa Barbara, CA). Polycation-compatible TSKgel G3000PWXL-CP column (Part No. 0021873, Tosoh Bioscience LLC, King of Prussia, PA) was used at a flow rate of 0.5 mL/min. Results were analyzed using Astra 6.1 software from Wyatt Technology. The content of cholesterol in PAMD-Ch was determined using 1H-NMR on Varian INOVA (500 MHz). The molecular weights of PAMD-Ch were calculated using the determined molar mass of PAMD and the known cholesterol substitution degree determined by 1H-NMR.
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3

Characterization of PEG-PAMD Copolymers

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The content of PEG in PEG-PAMD was determined using 1H-NMR on Varian INOVA (500 MHz). The molecular weight of the copolymers was analyzed by gel permeation chromatography (GPC) operated in 0.3 M sodium acetate buffer (pH 5) using Agilent 1260 Infinity LC system equipped with a miniDAWN TREOS multi-angle light scattering (MALS) detector and a Optilab T-rEX refractive index detector from Wyatt Technology (Santa Barbara, CA). Single-pore AquaGel™ columns (cat# PAA-202 and PAA-203, PolyAnalytik, London, ON, Canada) were used at a flow rate of 0.3 mL/min. GPC samples were prepared at 5 mg/mL. GPC data were analyzed using Astra 6.1 software from Wyatt Technology.
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4

SEC-MALS Analysis of Biomolecular Samples

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SEC-MALS experiments were performed using a Superdex Increase 200 10/300 GL column (GE Healthcare) on an Agilent 1260 HPLC Infinity II in PBS buffer at RT (~297 K). Protein elution was monitored by three detectors in series namely, an Agilent multi-wavelength absorbance detector (absorbance at 280 nm and 254 nm), a Wyatt miniDAWN TREOS multiangle light scattering (MALS) detector, and a Wyatt Optilab rEX differential refractive index (dRI) detector. The column was pre-equilibrated overnight in the running buffer to obtain stable baseline signals from the detectors before data collection. Molar mass, elution concentration, and mass distributions of the samples were calculated using the ASTRA 7.1.3 software (Wyatt Technology). A BSA solution (2–4 mg/ml), purchased from Sigma-Aldrich and directly used without further purification, was used to calibrate inter-detector delay volumes, band broadening corrections, and light-scattering detector normalization using standard protocols within ASTRA 7.1.3.
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5

SEC-MALS Analysis of RNAP-δ-HelD Complex

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SEC/MALS analysis was performed on an HPLC system (Agilent) coupled to mini DAWN TREOS multi-angle light scattering and RefractoMax 520 refractive index detectors (Wyatt Technology). RNAP-δ-HelD complex was assembled as for cryoEM. 60 μl of the sample at 1–1.3 mg/ml were chromatographed on a Superose 6 Increase 10/300 column (GE Healthcare) in buffer H or buffer H plus 0.15% (w/v) n-octylglucoside, supplemented with 0.02% (w/v) NaN3, at 18 °C with a flow rate of 0.6 ml/min. Data were analyzed with the ASTRA 6.1 software (Wyatt Technology) using monomeric bovine serum albumin (Sigma-Aldrich) as a reference.
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6

SEC-MALS Protein Characterization Protocol

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SEC-MALS experiments
were performed using a Superdex Increase 200
10/300 GL column (GE Healthcare) on an Agilent 1260 HPLC Infinity
II in phosphate buffer (PBS or 50 mM KPi KCl pH 7.4) at RT (ca. 297
K). Protein elution was monitored by three detectors in series namely,
an Agilent multiwavelength absorbance detector (absorbance at 280
and 254 nm), a Wyatt miniDAWN TREOS multiangle light scattering (MALS)
detector, and a Wyatt Optilab rEX differential refractive index (dRI)
detector. The column was pre-equilibrated overnight in running buffer
to obtain stable baseline signals from the detectors before data collection.
Molar mass, elution concentration, and mass distributions of the samples
were calculated using the ASTRA 7.1.3 software (Wyatt Technology).
A BSA solution (2–4 mg/mL), purchased from Sigma-Aldrich and
directly used without further purification, was used to calibrate
interdetector delay volumes, band broadening corrections, and light-scattering
detector normalization using standard protocols within ASTRA 7.1.3.
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7

Characterizing SuhB protein by SEC-MALS

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Size exclusion chromatography/multi-angle light scattering analyses were performed on an HPLC system (Agilent) coupled to a mini DAWN TREOS multi-angle light scattering and RefractoMax 520 refractive index detectors (Wyatt Technology). 60 μl (15 nmol) of SuhB were passed over a Superdex 200 increase 10/300 column (GE Healthcare) in 20 mM HEPES, pH 7.5, 50 mM NaCl, 0.02% (w/v) NaN3 at a flowrate of 0.6 ml/min. Data were analyzed with the ASTRA 6.1 software (Wyatt Technology) using monomeric bovine serum albumin (Sigma-Aldrich) as a reference.
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