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16 protocols using r26 tdtomato

1

Dual Reporter Mice for Neuroglial Studies

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Plp1::GFP mice were gifted to the Goldstein laboratory by Wendy Macklin23 (link) or purchased from Jackson Laboratories (Bar Harbor, ME) (stock number 033357). Animals homozygous for GFP expression were used for scRNA-seq, while animals heterozygous for GFP expression were used for RNAscope studies. Both homozygous and heterozygous animals were used for immunoflouresence studies. Actl6b::Cre (stock number 027826) and (R)26-tdTomato (stock number 007914) mice were purchased from Jackson Laboratories.52 (link),53 (link) Dual reporter mice were generated by first crossing Actl6b::Cre animals with (R)26-tdTomato animals, and subsequently crossing offspring with Plp1::GFP animals to yield Plp1::GFPI/ Actl6b::Cre;(R)26-tdTomato offspring.
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2

Dual Reporter Mice for Neuroglial Studies

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Plp1::GFP mice were gifted to the Goldstein laboratory by Wendy Macklin23 (link) or purchased from Jackson Laboratories (Bar Harbor, ME) (stock number 033357). Animals homozygous for GFP expression were used for scRNA-seq, while animals heterozygous for GFP expression were used for RNAscope studies. Both homozygous and heterozygous animals were used for immunoflouresence studies. Actl6b::Cre (stock number 027826) and (R)26-tdTomato (stock number 007914) mice were purchased from Jackson Laboratories.52 (link),53 (link) Dual reporter mice were generated by first crossing Actl6b::Cre animals with (R)26-tdTomato animals, and subsequently crossing offspring with Plp1::GFP animals to yield Plp1::GFPI/ Actl6b::Cre;(R)26-tdTomato offspring.
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3

Generating Mouse HNSCC Model with 4-NQO

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Bmi1CreER;R26tdTomato mice were generated by crossmating Bmi1CreER (Jackson Laboratory, JAX:010531) with R26tdTomato (Jackson Laboratory, JAX:007908) as described before (Chen et al., 2017 (link)). NOG mice were purchased from Taconic. Mice were housed under standard conditions in the animal facility of UCLA. All procedures were performed based on the UCLA Animal Research Committee-approved protocols. The induction of mouse HNSCC with 4-NQO was performed as described before (Jia et al., 2020 (link)).
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4

Mouse Genetic Models in Cancer Research

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All animal studies and procedures were reviewed and approved by the Columbia University Medical Center Institutional Animal Care and Use Committee (IACUC), and all mice were bred under specific pathogen free (SPF) conditions. Cck2r-BAC-CreERT2-mice (Hayakawa et al., 2015b (link)) and Eef1a1-LSL-Notch1(IC) mice (Buonamici et al., 2009 (link)) have been previously reported. LSL-Trp53R172H mice (Renz et al., 2018 (link)) were kindly provided by Dr. Kenneth Olive (Columbia University). Apcflox/flox mice have been previously described (Westphalen et al., 2014 (link)) and were obtained from the National Cancer Institute (NCI). Lgr5-DTR-GFP mice, which have been previously reported (Asfaha et al., 2015 (link)), were provided by Genentech. Lgr5-GFP-IRES-CreERT2 mice (Lgr5-GFP mice) were provided by Dr. Hans Clevers. Gastrin-deficient (GAS-KO) mice (Koh et al., 1997 (link)) and Cck2r−/− mice (Jin et al., 2009 (link)) have been reported in the past. R26-tdTomato and Cag-CreERT were purchased from the Jackson Laboratory. Cre recombinase was activated by oral administration of tamoxifen (2 mg/0.2 ml corn oil; Sigma-Aldrich).
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5

Genetically Engineered Mouse Models for Cancer Research

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All mouse strains are reported: aP2-Cre22 (link), R26-tdTomato (#7914, The Jackson Laboratory (JAX))55 (link), SmoM2 (#5130, JAX)56 (link), Ptenflox (#6440, JAX)57 (link), Pax7flox (#12653, JAX)58 (link), Cdkn2aflox (Nabeel Bardeesy59 (link), Trp53flox (#8462, JAX)60 , and Rb1flox (#01XC1, US NCI)60 . All mice were fed and watered ad libitum with consistent access to food and water, and all mice were housed in a facility kept at ambient temperature and humidity with 12-h light/12-h dark cycles. Anterior necks lightly palpated while scruffed to feel for tumors and scored when first felt. All animal experiments were reviewed and approved by the SJCRH Institutional Animal Care and Use Committee.
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6

Genetic Manipulation of Signaling Pathways in Mice

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All animal care and experimental procedures were complied with all ethical regulations for animal research and testing under the approval from the Institutional Animal Care and Use Committee (No. KA2016-12) of Korea Advanced Institute of Science and Technology (KAIST). Pdgfrb-Cre-ERT2 30, Lats1fl/fl/Lats2fl/fl31 (link),32 (link) and Yapfl/fl/Tazfl/fl 38 mice were transferred, established, and bred in specific pathogen-free (SPF) animal facilities at KAIST. C57BL/6 J, R26-tdTomato and Myh11-Cre-ERT2 mice were purchased from the Jackson Laboratory. All mice were maintained in the C57BL/6 background and fed with free access to a standard diet (PMI LabDiet) and water. In order to induce Cre activity in the Cre-ERT2 mice, 2 mg of tamoxifen (Sigma-Aldrich) dissolved in corn oil (Sigma-Aldrich) was injected intraperitoneally (i.p.) at indicated time points for each experiment. Cre-ERT2 negative but flox/flox-positive mice among the littermates were defined as control (WT) mice for each experiment. Mice were anesthetized with i.p. injection of a combination of anesthetics (80 mg/kg ketamine and 12 mg/kg of xylazine) before being sacrificed.
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7

Inducible Acinar Cell Lineage Tracing

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To enable tracing of acinar lineage cells, an inducible acinar cell-specific reporter mouse was utilized. Briefly, the R26tdTomato (Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J) reporter strain (Jackson Laboratory) was crossed to Mist1CreERT2 on a C57/Bl6 background, as described previously (Aure, Konieczny, & Ovitt, 2015 (link)), to generate the Mist1CreERT2;R26TdTomato strain for acinar lineage tracing. Tamoxifen was dissolved in 10% ethanol and 90% corn oil at 60 mg/mL. Oral gavage with tamoxifen was performed for two consecutive days on 6–12 week old female mice, each at a dose of 0.25 mg/g, to induce Cre activation. SMG were harvested for culture one week following tamoxifen administration. Cell isolation and seeding were performed as previously described.
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8

Conditional Labeling of Oit3+ Cells

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All mice in the study were kept in a pathogen-free facility. C57BL/6 and Oit3-CreERT2 mice were obtained from GemPharmatech (Jiangsu, China), while the R26-tdTomato mice were purchased from Jackson Laboratory (stock #007905, MGI:3809523). The Oit3-CreERT2 mouse line was generated by GemPharmatech using the CRISPR/Cas9 technology. In brief, P2A-CreERT2 was inserted into exon 9 of the Oit3 gene to create a knock-in line of Oit3-CreERT2 through homologous recombination. The Oit3-CreERT2 mouse was then crossed with the R26-tdTomato responsive reporter line, resulting in the Oit3-CreERT2-R26-tdTomato mouse line. tamoxifen injections were used to induce Cre-loxP recombination and label Oit3+ cells. Polymerase chain reaction (PCR) analysis was performed on tail DNA to determine the genotypes of the mice. PCR primers were designed to target the correct allele (Oit3-CreERT2 primers: 5′-TGACTGTCCTTATCCCTTCAGGAG-3′; 5′-CATGTCCATCAGGTTCTTGCGAAC-3′). Male mice at six weeks of age were intraperitoneally injected with tamoxifen (100 mg/kg, Sigma, T5648) once daily for five injections. The mice were used for further experiments one week after the last injection.
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9

Diverse Transgenic Mouse Models for Gastric Cancer Research

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Mist1-CreERT2 mice (Shi et al., 2009 (link)), Cxcl12-dsRED mice (Ding and Morrison, 2013 (link)), Troy−/− and Troy-BAC-CreERT2 mice (Fafilek et al., 2013 (link)), H/K-ATPase-Cxcl12 mice (Shibata et al., 2013 (link)), Eef1a1-LSL-Notch1(IC) mice (Buonamici et al., 2009 (link)), Wnt5aflox mice (Miyoshi et al., 2012 (link)) were described previously. Cxcr4-EGFP mice were kindly provided by Richard J. Miller (Northwestern University Medical School, USA). LSL-KrasG12D and LSL-Trp53R172H mice were provided by Dr. Kenneth Olive (Columbia University, USA). Apcflox mice were obtained from the National Cancer Institute (NCI). Lgr5-DTR-GFP mice were provided by Genentech. Cdh1flox, R26-mTmG, R26-LacZ, R26-TdTomato, R26-Confetti, R26-EYFP, Cxcl12flox, Tie2-Cre, Id2-GFP, and Cag-CreERT2 mice were purchased from the Jackson Laboratory. Cre recombinase was activated by oral administration of TAM (1–5mg/0.2mL corn oil, as indicated). All animal studies and procedures were approved by the ethics committees at Columbia University and the Academy of Sciences of the Czech Republic. Human stomach tissue sections were obtained from DGC patients who underwent surgical resection or endoscopic submucosal dissection from 2001 to 2012 at Gifu University Hospital, Gifu, Japan. All study protocols were approved by the ethics committees, and written informed consent was obtained from all patients.
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10

Knockout Mouse Models for Vascular Research

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Specific pathogen-free (SPF) C57BL/6 J mice and R26-tdTomato were purchased from the Jackson Laboratory. VE-cadherin-Cre-ERT2 28, Mst1flox/flox27 (link), Mst2 null34 (link), and Foxo1flox/flox38 (link) mice were transferred, established and bred in SPF animal facilities at KAIST and fed with free access to a standard diet (PMI Lab diet) and water. In order to induce Cre activity in the Cre-ERT2 mice, tamoxifen (Sigma-Aldrich, T5648) was given with following dosages and schedules: for neonatal mice, 100 μg of tamoxifen dissolved in corn oil (Sigma-Aldrich, C8267) was injected into the stomach daily from P1 to P3; for OIR mice, 200 μg of tamoxifen was injected intraperitoneally (i.p.) daily from P12 to P14; for adult mice aged over 8 weeks, 2 mg of tamoxifen was injected i.p. for 5 consecutive days from the indicated time point. For anesthesia, mice were injected i.p. with the anesthetic solution (ketamine 40 mg/kg and xylazine 5 mg/kg). We complied with all ethical regulations for animal testing and research and performed all animal experiments under the approval from the Institute Animal Care and Use Committee (No. KA2017-31) of KAIST.
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