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7 protocols using immun blot lf pvdf membrane

1

Western Blot Analysis of ABCC4 and CFTR

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HBEC6-KT and Calu-3 cells were lysed using RIPA Lysis Buffer containing Protease Inhibitor Cocktail powder (Sigma-Aldrich) for 60–90 min at 4 °C on a rocker. Lysates were then centrifuged at 16,000xg for 15 min with the supernatants collected for downstream immunoblots for ABCC4 and CFTR. Protein quantification was performed using a BCA protein assay. Twenty micrograms of protein were loaded on 4–15% gradient TGX Stain-Free Protein Gels and transferred to Immun-Blot LF PVDF membrane (Bio-Rad). The membranes were blocked with 1X TBS with 0.05% Tween 20 and 5% skim milk powder for 2 h at 25 °C. The membranes were then incubated with primary antibody ABCC4/MRP4 (1:40, Abcam, AB15602) or CFTR (1:5000, UNC-Chapel Hill, AB596) overnight. The membranes were then washed in 1X TBS with 0.05% Tween 20 and incubated with HRP-linked anti-rat secondary antibody (1:3000, Cell Signaling Technology, 7077S) or anti-mouse secondary antibody (1:3000, Cell Signaling Technology, 7076S) for 2 h at 25 °C. A chemiluminescence image of the blot was taken using the Bio-Rad Image Lab software. Full western blot images have been included and can be found in the supplementary information (Supplementary Fig. 4).
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2

SARS-CoV-2 Viral Protein Quantification

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48 h postinjection, oocyte lysates were prepared by lysing oocytes osmotically in a 20 mM HEPES (pH 7.3) solution (20 μl per oocyte) (22 ). Lysates were centrifuged for 5 min at 10,000 rpm. The supernatant was used to probe for E protein. The pellets were resuspended in 50 mM Tris, 150 mM NaCl, 1% NP-40 (pH 7.3) buffer, and these solutions were used to probe for ORF8 and S protein. 12% Mini-PROTEAN TGX Precast Protein Gels (Bio-Rad Laboratories, Hercules, CA) were used for electrophoresis and wet-transferred onto an Immun-Blot LF PVDF Membrane (Bio-Rad Laboratories, Hercules, CA). E protein was probed using rabbit antiserum that responds to the C-terminus of SARS-CoV-1 E protein at 1:1000 concentration. The antiserum was a gift from Carolyn Machamer (23 (link)). The ORF8 was probed using a primary antibody at 1:500 concentration (catalog number (Cat#): GTX135591; GeneTex, Irvine, CA). S protein was probed using a primary antibody at 1:500 concentration (Cat#: PA581795; Invitrogen, Waltham, MA). The primary antibodies were visualized using IRDye 800CW Donkey anti-Rabbit antibody (Cat#: 926-32213; Li-COR, Lincoln, NE) at 1:1000 concentration.
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3

Western Blot Analysis of Recombinant Virus Proteins

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Twenty-four hours after transduction with one of the recombinant viruses—rMVA-k1, rMVA-k2, rMVA-k5, rMVA-M001, rMVA-hlHA or rMVA-NP+M1 (multiplicity of infection (MOI) was 2)—BHK-21 cells were collected, washed three times with PBS, resuspended in RIPA lysis buffer containing 1% NP-40 and lysed using ultrasonication. Cell debris was removed by centrifugation (15,000× g, 15 min, 4). A PageRuler Plus protein marker (Thermo Fisher Scientific Inc., Waltham, MA, USA) and the cell lysates were subjected to 12% SDS–PAGE (each sample contained 20 micrograms of protein). After electrophoresis under reducing conditions, the proteins were transferred to an Immun-Blot LF PVDF membrane (Bio-Rad Laboratories, Inc., Hercules, CA, USA) using wet electrophoretic transfer. The membranes were blocked in PBS containing 5% skim milk powder and 0.1% Tween 20 and then incubated overnight at +4 °C with antibodies against the 6x-His tag (HIS. H8-HRP, Invitrogen, Carlsbad, CA, USA) at a dilution of 1:20,000 or antibodies against beta-actin (AC-15-HRP, Abcam, Cambridge, UK) at a dilution of 1:50,000. Then, the membranes were washed 3 times in PBS with 0.1% Tween 20. Protein complexes were detected using Clarity Western ECL Substrate reagent (Bio-Rad Laboratories, Inc., Hercules, CA, USA) in accordance with the manufacturer’s recommendations and visualized using X-ray film (Fujifilm, Tokyo, Japan).
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4

Protein Extraction and Western Blot Analysis

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Cells were washed once with PBS and lysed in cold RIPA lysis buffer (50 mM Tris pH 7.5, 150 mM NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS, 1× protease inhibitor cocktail (Sigma)). Lysate was sonicated (Qsonica Q800 Sonicator) in polystyrene tubes at 50% power setting, 30 s on/30 s off for a total sonication time of 5 min at 4 ºC. After removing debris by centrifugation at 16,000g for 10 min, protein concentration in the supernatant was measured (Pierce BCA Assay Kit). 20–50 μg protein lysate was denatured in 1× Laemmli buffer at 95 ºC for 10 min and resolved by SDS-PAGE. Protein was transferred to Immun-Blot LF PVDF membrane (Bio-Rad). The membrane was blocked with blocking buffer (PBS/0.05% Tween-20 containing 5% milk) for 1 h at room temp, incubated with primary antibody in blocking buffer overnight at 4 ºC, washed three times with PBS/0.05% Tween-20 for 5 min each, incubated with dye-conjugated secondary antibody in blocking buffer for 1 h at room temp and washed three times again with PBS/0.05% Tween-20 for 5 min each. Protein bands were visualized on an LI-COR Odyssey CLx with Image Studio v5.2 software using 700 nm and 800 nm channels.
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5

SDS-PAGE and Western Blot Analysis of His-Tagged rOmDOT1L

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Protein samples (10 µg) were mixed with a loading buffer (2X) containing Sodium dodecyl sulfate (SDS), heated to 100 °C and applied to a 12% polyacrylamide gel. Following the polyacrylamide gel electrophoresis (PAGE), protein profiles were visualized using Coomassie Brilliant Blue R-250 staining (Bio-Rad Laboratories, Hercules, CA, USA, Cat. No. 160435). Parallel to this set up, another SDS-PAGE gel was run, and the proteins were transferred to Immun-Blot LF PVDF membrane (Bio-Rad Laboratories, Hercules, CA, USA, Cat. No. 1620177) using Trans-Blot Turbo system (Bio-Rad Laboratories, Hercules, CA, USA). Before transferring the proteins, membranes were blocked with 2.5% (w/v) non-fat skimmed milk dissolved in Phosphate-buffered saline (PBS) with 0.05% Tween 20 (PBST). A His-Tag horseradish peroxidase-conjugated antibody (R&D systems, MN, USA, Cat. No. MAB050H) was diluted in PBST (1:1000) and used for binding and detection of His-tagged rOmDOT1L. The membranes were washed three times with 1X PBST for 15 mins. Pierce ECL Western Blotting kit (Thermo Fisher Scientific, Waltham, MA, USA, Cat. No. 32106) was used for chemiluminescent assay and the signals were analyzed in Chemi Doc Imager (Bio-Rad Laboratories, Hercules, CA, USA).
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6

Western Blot Protein Detection

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The samples and PageRuler Plus protein marker (Thermo Fisher Scientific Inc., Waltham, MA, USA) were applied to a 12% SDS-PAGE gel (each sample contained 20 µg of protein). After electrophoresis under reducing conditions, proteins were transferred to a membrane (Immun-Blot LF PVDF membrane, Bio-Rad Laboratories, Inc., Hercules, CA, USA) by wet transfer. The membranes were blocked in PBS containing 5% skimmed milk powder and 0.1% Tween 20 (Sigma-Aldrich, St. Louis, MO, USA) and incubated overnight at 4 °C with polyclonal HRP-conjugated goat antihuman IgG(H+L) antibodies (Jackson ImmunoResearch Europe Ltd., Ely, Cambridgeshire, UK) at a 1:15,000 dilution. Then, the membrane was washed five times in a solution of PBS and 0.1% Tween 20 (Sigma-Aldrich, St. Louis, MO, USA). Protein complexes were detected with Clarity Western ECL Substrate reagent (Bio-Rad Laboratories, Inc., Hercules, CA, USA) according to the manufacturer’s recommendations and photographed using X-ray film (Fujifilm, Tokyo, Japan).
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7

Western Blot Analysis of Viral Proteins

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A rabbit antibody directed to an epitope conserved in the VP1 of IAPV, KBV and ABPV (GGRRYKFFNTTPLK) was synthesized by GenScript. Total protein was extracted with TRIzol from cell culture samples (after RNA extraction) and diluted in 1% SDS following the supplier’s protocol. Equivalent amounts of protein from corresponding replicates of each sample were pooled and 50 μg were separated in 4–12% NuPAGE Bis Tris precast gels (Life Technologies). Proteins were blotted to Immun-Blot LF PVDF membrane (BioRad) and probed with rabbit anti-beta actin (0.5 μg/mL) (NeoBiolab) and then with a secondary anti-rabbit IgG (0.1 μg/mL) conjugated to HRP (GenScript). The signal was detected using Immun-StarWesternC kit (BioRad) in a ChemiDoc XRS + system (BioRad). Membranes were stripped using Western Reprobe PLUS buffer (BioSciences) for 1 hour at room temperature and then reprobed with rabbit anti-VP1 (1 μg/mL) followed by incubation with anti-rabbit IgG and detection as described before.
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