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2 protocols using ab137444

1

Macrophage Extracellular Trap Visualization

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Cocultures were completed and macrophages were fixed as described above. Coverslips were washed once with PBS prior to staining with SYTOX Green (final concentration, 10 μM) (ThermoFisher) for double-stranded DNA (dsDNA), and Hoechst 33342 (final concentration, 5 μM ) (ThermoFisher) for condensed chromatin (nuclei). Additional staining for histones and MMPs was accomplished by blocking cells in 1% bovine serum albumin in PBS for 30 min at 37°C followed by a 1-h incubation at 37°C with antibodies for histone H3 (ab5103; Abcam, Cambridge, MA), neutrophil elastase (ab68672; Abcam), myeloperoxidase (ab9535; Abcam), matrix metalloproteinase 1 (MMP-1) (ab551168; Abcam), MMP-7 (ab5706; Abcam), MMP-8 (ab81286; Abcam), MMP-9 (ab38898; Abcam), or MMP-12 (ab137444; Abcam). Cells were then washed three times with 1% BSA in PBS, followed by a 30-min incubation with an Alexa Fluor 594-conjugated goat anti-rabbit secondary antibody (ThermoFisher) and two additional washes with 1% BSA in PBS prior to mounting coverslips onto glass microscope slides with Aqua Poly/Mount (Polysciences Inc., Warrington, PA). Macrophages were visualized with a Zeiss LSM 710 META inverted laser scanning confocal microscope, and extracellular traps were identified by dsDNA staining that extended into the extracellular environment.
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2

Evaluating TACE Effectiveness Using IHC

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To further verify the ability of our signature to predict the effectiveness of TACE, immunohistochemical (IHC) staining of the paraffin-embedded HCC biopsy tissues of patients in the external verification was performed according to the manufacturer’s instructions. Anti-GNMT antibody (Abcam, #ab224753, 1:1000) and anti-MMP12 antibody (Abcam, #ab137444, 1:100) were used for IHC. The staining score indicative of relative protein expression levels was calculated according to the mean optical density (OD) value of the randomly selected visual field by ImageJ (2.9.0/1.53t). Following this, we employed the staining scores of the two proteins as relative protein expression levels to calculate the relative TACE effectiveness scores for each patient in the external validation set using the same formula and methodology. Subsequently, patients were categorized into HE and LE groups based on the median score of relative TACE effectiveness scores. The above operations were performed by two independent pathologists.
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