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14 protocols using disbac2 3

1

Membrane Potential Measurement Using DiSBAC2(3)

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To measure the change in cell membrane potential caused by the various treatments, cells on various substrates were washed by Hanks’ balanced salt solution (HBSS, Thermofisher) and then stained with 0.5 μM bis-(1,3-diethylthiobarbituric acid)trimethine oxonol (DiSBAC2(3), Thermofisher) for 30 min. Images were taken by confocal microscope (Leica SP8) with an excitation wavelength of 530 nm and an emission collection band of 565–575 nm. ImageJ software was used to specify a region of interest enclosing each individual cell and then obtain the integrated fluorescence signal from each cell. DiSBAC2(3) is a potential-sensitive fluorescent dye which can enter depolarized cells where it binds to intracellular proteins or membrane and exhibits enhanced fluorescence. Increased depolarization results in additional influx of the anionic dye and an increase in fluorescence, and, conversely, hyperpolarization is indicated by a decrease in fluorescence.
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2

Diverse Ion Channel Modulators

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9-Phenanthrol, ATP, oxaliplatin, thapsigargin, and valinomycin were purchased from Sigma-Aldrich (St Louis, MO). DiSBAC2(3) was purchased from ThermoFisher (Waltham, MA). A-967079, 1,2-bis(2-aminophenoxy)ethane-N,N,N′,N′-tetraacetic acid tetrakis(acetoxymethyl ester), DCEBIO, SKA 31, TRAM 34, triphenylphosphine oxide, and U73122 were purchased from Tocris Bioscience (Bristol, United Kindgom).
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3

Visualizing Epithelial Deformations in Organoids

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Shortly after patterning, organoids were incubated in a 2 μM solution of DiSBAC2 (3) (Thermo Fisher Scientific) in FluoroBrite medium for at least 20 min and imaged using confocal microscopy (Zeiss LSM 710). High-resolution z-stacks were acquired of live organoids (~1-μm slices), with images centered at the apex of epithelial deformation following photoinduced shape change. In Fiji, a sum slices projection was generated, and the freeform selection tool was used to manually segment patterned and unpatterned regions of epithelium. Fluorescence intensity in these regions was measured, and all values were normalized to the average of the unpatterned regions for each organoid. Representative images were made using the “thermal” lookup table in Fiji.
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4

Measuring Cellular Membrane Potential

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Bis‐(1,3‐diethylthiobarbituric acid) trimethine oxonol (DiSBAC2(3)) (Invitrogen™; ThermoFisher Scientific) was added to the culture medium at a final concentration of 1 μM and was incubated at 37°C for 30 min. Cells were then harvested and washed out of the dye before acquisition on a FACSCanto II (BD Biosciences). Data were analyzed using Flowjo® version 8.
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5

Evaluating Parasite Membrane Potential

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Estimation of ΔΨp was monitored by measuring the increase in absorbance of bis-(1,3-diethylthiobarbituric acid) trimethine oxonol [DiSBAC2(3)] (Invitrogen) as previously described [24] (link). Briefly, L. amazonensis promastigotes (2×107/mL) were added into black polystyrene 96-well microplates in HBSS+Glc containing 0.2 µM DiSBAC2(3) in a final volume of 100 µL per well. The plate was incubated at 25°C in a microplate reader (POLARstar Omega, BMG Labtech) and fluorescence was recorded (λex = 544 nm; λem = 584 nm) every 2 min. After signal stabilization raloxifene was added to final concentrations of 15, 30 or 60 µM. Gramicidin D 8 µM (Sigma-Aldrich) was used as a positive control. Untreated parasites and parasites incubated with the highest volume of diluent (DMSO 0.6%) were used as negative controls. No interference in DiSBAC2(3) fluorescence was observed when raloxifene was added to HBSS+Glc in the absence of cells. Three independent experiments were performed, each one with triplicate samples.
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6

Measuring Cell Membrane Potential

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Plasma membrane potential was determined using the slow-response potential-sensitive dye DiSBAC2(3) (Invitrogen, Life Technologies, Carlsbad, CA). Lin(−) cells or BMDDCs were harvested, washed three times with PBS, and re-suspended at a concentration of 0.5×106 cell/ml in PBS with 100 µM CaCl2. Cell suspensions were incubated with 5 µM (final concentration) DiSBAC2(3) in a quartz cuvette under constant stirring at 37°C for 3 min in the dark. Then the kinetics of the emission at 560 nm (Ex = 530 nm) were monitored by a QM-4 spectrofluorometer. The emission of each sample was recorded for 100 seconds before and until 500 seconds after the addition of 100 ng/ml CXCL12. Representative traces of three independent experiments were averaged and smoothed using standard Sigma-Plot 10.0 software (Systat Software, San Jose, CA).
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7

Voltage Sensor Probe Assay

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A voltage sensor probe (VSP) set (CC2-DMPE and DisBAC2(3)), VABSC-1 (Voltage Assay Background Suppression Compound), and Pluronic®-F127 were purchased from Invitrogen (Carlsbad, CA, USA). BTX and TTX were purchased from Latoxan (Valence, France). Asante NaTRIUM Green-2 (ANG-2) was purchased from Interchim (Montluçon, France). All other reagents (Ponceau 4R) and solvents were obtained from Sigma-Aldrich (Saint-Louis, MO, USA) or Fisher Scientific (Waltham, MA, USA).
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8

FRET-Based Membrane Potential Sensing

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Voltage sensor probes, coumarin-labeled phospholipid CC2-DMPE (FRET donor) and oxonol dye DiSBAC2(3) (acceptor) were from Invitrogen. Cells (3×104 cells/well) in optical 96-well plates were loaded with 10 µM CC2-DMPE in FRET buffer (10 mM Hepes-NaOH, pH 7.4, 160 mM NaCl, 0.9 mM CaCl2, 1 mM MgCl2, and 10 mM glucose) containing 200 µg/ml Pluronic F-127 for 30 min, washed and incubated in 100 µl 10 µM DiSBAC2(3) in FRET buffer for 20 min. Tartrazine (1.2 mM final concentration) was added, and after 10 min, fluorescence measurements (λex of 420 nm; λem of 460 nm and 550 nm; 10-nm bandpass filters) were conducted in well mode at 37°C and 5% CO2. Gain was adjusted to yield similar baseline readings for each fluorophor at resting potential. Following baseline acquisition, 10 µl 0.82 M KCl, 1 mM BzATP or buffer control were injected while monitoring fluorescence. Following subtraction of signal without cells, the signal ratio (SR) before and at equilibrium after depolarization was calculated, and the response ratio (RR) derived as RR=SRdepol/SRpol.
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9

Neuronal Cell Culture and Analysis Protocol

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DMEM medium, Neurobasal A medium, F-12 medium, Fetal Bovine Serum (FBS), HBSS, D-PBS, Penicillin/Streptomycin, B-27, Collagenase II, Dispase II, Trypsin, Alexa Fluor® 647 conjugated anti-rabbit antibody, and DiSBAC2(3) were purchased from Life Technologies (Carlsbad, CA, USA). DNAse 1, 30% BSA, Cytosine β-d-arabinofuranoside hydrochloride (ARA-c), 5-Fluoro-2′-deoxyuridine 5′-monophosphate sodium salt (FdU) solution (FdU), poly-d-Lysine, DAPI, and 10% neutral buffered formalin solution were purchased from Sigma-Aldrich (Saint Louis, MO, USA). Angiotensin II was purchased from Tocris (Bristol, UK). C21 (MW = 475.2) and EMA401 (MW = 507.2) were synthesized by AGV discovery (Clapiers, France), purified by HPLC (>95%), and characterized by 1H NMR (Figures S3 and S4) and mass spectrometry. Anti-rabbit β3-Tubulin (D71G9) XP® (anti-Tuj1) was purchased from Cell Signaling Technologies® (Danvers, MA, USA). Micro-titer plate (384-well), µClear®, was purchased from Greiner Bio-One SAS (Les Ulis, France). Purified mycolactone was obtained and quantified as described in a previous study [9 (link)], and re-suspended in DMSO at 5 mg/mL and stored at −20 °C as aliquots in amber glass tubes.
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10

Nanoparticle Synthesis and Characterization

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ZnONPs in powder form (catalog #544906; particle size 50–70 nm) were purchased from Sigma-Aldrich (Oakville, ON, Canada). An aqueous dispersion of AgNPs (2 mg/mL; 31% silver content; particle size 1–10 nm) was purchased from Sciventions Inc (Toronto, ON, Canada). MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide), sodium azide, glucose, MES (2-morpholinoethanesulfonic acid), DMSO (dimethyl sulfoxide), geneticin (G418), CCCP (carbonyl cyanide 3-chlorophenylhydrazone), and MUG (4-methylumbelliferyl-D-galactopyranoside) were purchased from Sigma-Aldrich. DiSBAC2(3) [bis-(1,3-diethylthiobarbituric acid)trimethine oxonol] was purchased from Life Technologies (Carlsbad, CA, USA).
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