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7 protocols using pierce protein a g ultralink resin

1

Quantitative IgE ELISA Assay

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Immulon 4 plates was coated with OvTrop (10 μg/well) or (KLH) (10 μg/well). Another set of plate for measuring the Der p 10-specific IgE response was coated with Der p 10 (5 μg/well). Both sets were incubated overnight at 4C, then blocked with 200 μl of blocking buffer (PBS 1X, 0.05% Tween-20 containing 5% BSA). The IgE detection ELISA plate was placed at 4C until later use. Three pools of 50 μl of undiluted IgG-depleted (using Pierce Protein A/G Ultralink Resin (ThermoFisher, Waltham, USA) sera was added to both OvTrop and KLH antigen-containing wells and incubated overnight at 4°C. 50uL of each pool were transferred to the Der p 10-coated plate, following incubation for 1 hour at RT. After washing, 50 μl of 1:250 (diluted in PBS 1X, 0.05% Tween-20 containing 1% BSA) biotinylated anti-mouse IgE (Invitrogen, Carlsbad, USA) were added to the appropriate wells and incubated 1 hour at RT. Following an additional wash step, 50μl of streptavidin-conjugated to HRP (R&D Systems, Minneapolis, USA) was added diluted 1:100 and incubated for 30 minutes at RT. A final wash step was performed and 50μl of 1Step Ultra TMB-ELISA Substrate (ThermoFisher) was added to each well and the colorimetric reaction was stopped after 10 minutes 30 minutes by adding 25 μl of H2SO4. The plate was then read at 450 nm.
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2

Co-immunoprecipitation for MGMT analysis

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Co-immunoprecipitation (Co-IP) analyses were conducted according to a previous report [26 (link)]. To exclude the contaminating effect of DNA attached to tested proteins, 20 U/ml of DNase I (Roche) was added in lysis buffer. In brief, the cell lysates were subsequently sonicated, washed, and incubated with anti-MGMT antibodies (Abcam) or negative control IgGs (Santa Cruz Biotechnology). After incubation for 24 h, Pierce Protein A/G UltraLink Resin (Thermo Fisher Scientific) was added to capture immune complexes. After washing, the precipitated proteins were resuspended in nonreducing loading buffer and heated at 95 °C for 5 min before Western blot analyses.
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3

Immunoprecipitation Protocol for Protein Analysis

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Cells were cultured and washed in prechilled PBS three times before lysing them in NP-40 lysis buffer supplemented with proteinase inhibitors and phosphatase inhibitors. The cell lysate was centrifuged for 15 min at 14,000 rpm and 4 °C, and the supernatant was collected. 50 μL of the supernatant was taken for whole cell lysate (WCL) input; then, primary antibodies were added and incubated at 4 °C for 4 h. Pierce Protein A/G UltraLink resin (Thermo Fisher) was washed twice with PBS and added to the supernatant overnight at 4 °C. Protein A/G beads were then washed in NP-40 lysis buffer five times at 2000 rpm for 1 min. After the last wash, all supernatant was removed and adequate NP-40 lysis buffer was added to each IP sample. Appropriate 5× protein loading buffer was added to WCL samples and IP samples, and they were heated for 10 min under 100 °C. WCL input and co-IP samples were then loaded to 4–15% precast gels (Bio-Rad) for analysis. HRP-conjugated confirmation-specific secondary antibodies (CSTs) were used to eliminate the background of IgG effect.
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4

Protein A/G Affinity Purification and Detection

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Pierce Protein A/G Ultralink Resin (5 μL; Thermo Fisher Scientific) and 1 μL sample serum in 100 μL Buffer A (50 mM Tris, 150 mM NaCl, 0.1% Triton X-100, pH 7.5) was added to 96-well opaque Multiscreen HTS 96 HV 0.45 μm filter plates (Millipore Sigma). Plates were incubated with shaking at 300 rpm for 1 h at room temperature. Supernatant in wells was removed by centrifugation at 2000 g for 1 min. Luciferase fusion protein (106 RLU) was added to the wells in 100 μL Buffer A. Plates were incubated with shaking at 300 rpm for 1 h at room temperature. Using a vacuum manifold, wells were washed 8 times with 100 μL Buffer A followed by 2 washes with 100 μL PBS. Remaining supernatant in wells was removed by centrifugation at 2000 g for 1 min. Plates were dark adapted for 5 min. An autoinjector equipped Synergy HTX Multi-Mode Microplate Reader (BioTek) was primed with QUANTI-Luc Gold (InvivoGen). Plates were read using the following per well steps: 50 μL QUANTI-Luc Gold injection, 4 second delay with shaking, read luminescence with an integration time of 0.1 seconds and a read height of 1 mm.
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5

Protein A/G Affinity Purification and Luminescence Quantification

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Pierce Protein A/G Ultralink Resin (5 μL; Thermo Fisher Scientific) and 1 μL sample serum in 100 μL Buffer A (50 mM Tris, 150 mM NaCl, 0.1% Triton X-100, pH 7.5) was added to 96-well opaque Multiscreen HTS 96 HV 0.45 mm filter plates (Millipore Sigma). Plates were incubated with shaking at 300 rpm for 1 h at room temperature. Supernatant in wells was removed by centrifugation at 2000 g for 1 min. Luciferase fusion protein (106 RLU) was added to the wells in 100 μL Buffer A. Plates were incubated with shaking at 300 rpm for 1 h at room temperature. Using a vacuum manifold, wells were washed 8 times with 100 μL Buffer A followed by 2 washes with 100 μL PBS. Remaining supernatant in wells was removed by centrifugation at 2000 g for 1 min. Plates were dark adapted for 5 min. An autoinjector equipped Synergy HTX Multi-Mode Microplate Reader (BioTek) was primed with QUANTI-Luc Gold (InvivoGen). Plates were read using the following per well steps: 50 μL QUANTI-Luc Gold injection, 4 second delay with shaking, read luminescence with an integration time of 0.1 seconds and a read height of 1 mm.
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6

Antibody-based Investigation of DNA Repair Factors

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Mouse anti-DDX5 (A-5, sc-166167) monoclonal and rabbit anti-RAD51 (H-92, sc-8349) and anti-Ku80 (H-300, sc-9034) antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit anti-53BP1 (NB100-304) was from Novus Biologicals (Littleton, CO). Mouse anti-γH2AX (05-636), anti-p68 (DDX5) (clone204, 05-850) monoclonal antibodies, and rabbit anti-BRCA1 antibody (07-434) were obtained from Millipore (Billerica, MA). Anti-cyclin A (BD611268) monoclonal antibody was from BD Biosciences (San Jose, CA). Anti-BrdU antibody (RPN202) was from Cytiva. V5 mouse mAb antibody was from Life Technologies (#R96025). S9.6 antibody was purified, in house, from the hybridoma (ATCC® HB-8730). Propidium iodide and the Alexa Fluor-conjugated goat anti-rabbit antibodies and anti-mouse antibodies were from Invitrogen (Carlsbad, CA). Escherichia coli RNase H was purchased from New England Biolabs. Bromo-2′-deoxyuridine (BrdU), 4-hydroxytamoxifen (4-OHT), protein A Sepharose, mouse anti-Flag, and α-tubulin monoclonal antibodies were from Millipore-Sigma (St Louis, MO). For DRIP, Pierce™ Protein A/G UltraLink™ Resin was purchased from Thermo Fisher (#53133). Shield 1 was purchased from Clontech Laboratories (Mountain View, CA). Protease inhibitor cocktail and protein phosphatase inhibitor cocktail were purchased from Roche (Mississauga, ON, Canada).
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7

Immunoprecipitation and Western Blot

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Cells were lysed in lysis buffer (50 mM Tris–HCl [pH 8.0], 5 mM EDTA, 150 mM NaCl, 0.5% NP-40, and 1 mM phenylmethylsulfonyl fluoride. Cell lysate (200 to 1000 μg of protein) was immunoprecipitated with specific antibodies and Pierce Protein A/G UltraLink Resin (Thermo Fisher) for 18 h at 4°C and eluted using 2× SDS buffer and followed by Western blot detection.
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