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HEK293E is a widely used human embryonic kidney cell line. It is a derivative of the HEK293 cell line, which was originally developed by transforming human embryonic kidney cells with sheared adenovirus 5 DNA. HEK293E cells are suitable for a variety of applications, including protein expression, virus production, and cellular studies.

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11 protocols using hek293e

1

Optimization of TGE in CHO and HEK-293E cells

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Cell lines tested for TGE included CHO-S (Invitrogen), a CHO-S cell line stably expressing Bcl-xL created using the same vector used for the transient expression of Bcl-xL as described below, and the HEK-293E (ATCC) cell line. The HEK-293E cell line is a suspension adapted HEK293 cell line stably expressing the Epstein–Barr virus nuclear antigen (EBNA-1) allowing for episomal replication of ori-P containing plasmids, and has been shown to increase transgene expression [25 (link)]. CHO cells were maintained in SFM4CHO (Hyclone) media supplemented with 8 mmol L-glutamine and 10 ml/L HT supplement while HEK-293E cells were maintained in a 50/50 mixture of SFM4HEK 293 (Hyclone) and FreeStyle 293 (Gibco). These media are here to after referred to as “maintenance medium”. All cultures were grown in a 37°C incubator with 5% CO2 and shaken at 125 rpm either in 125 mL shake flasks or a six-well plate and passaged at a seeding density of 2 × 105 cells/mL every 3-4 days. Viable cell counts were assessed using the Nova Bioprofile flex (Nova Biomedical) or the Guava EasyCyte plus system (Millipore) with the Nexin or viacount assay per the manufacturer's instructions.
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2

Cell Culture Protocols for Cancer Research

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HEK293E and HEK293T cells were obtained from ATCC and GenHunter, respectively. Human renal angiomyolipoma-derived LAM 621–101 cells stably expressing empty vector or TSC2 were provided by Elisabeth Henske (Siroky et al., 2012 (link)). BT549, DLD1, MCF7, and NCI-H1299 cells were obtained from ATCC. HEK293E, HEK293T, NCI-H1299, BT549, and LAM 621–101 Cells were grown in DMEM (Gibco) with 10% FBS (Sigma-Aldrich-Aldrich) at 37°C with 5% CO2. MCF7, and DLD1 cells were cultured in RPMI (Corning) with 10% FBS (Sigma-Aldrich-Aldrich).
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3

Cell Line Culture and Maintenance

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HEK293T (#CRL-3216) and HEK293E (#CRL-10852) were from ATCC, HepG2 was from Prof. Lei Chen (Peking University), Huh7 was from Prof. Xiao-Wei Chen (Peking University), and prostate cancer cell lines (PC3, 22Rv1, and DU145) were from Prof. Hong Wu (Peking University). HEK293T, HEK293E, DU145, HepG2, and Huh7 were kept in high glucose Dulbecco’s modified Eagle medium (DMEM, Gibco C11995500BT). PC3 was kept in Ham’s F-12K (Gibco 21127022). 22Rv1 was kept in RPMI 1640 (Gibco 11875093). Cells were maintained in the cell culture medium supplemented with 10% fetal bovine serum (FBS), 100 U/mL penicillin, and 100 mg/mL streptomycin in a humidified incubator at 37 °C and 5% CO2.
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4

Production and Purification of Recombinant LuloHya

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LuloHya coding DNA sequence (AF132515) was codon-optimized for mammalian expression and synthesized by BioBasic Inc. VR2001-TOPO vector containing LuloHya sequence (Vical Incorporated) was transformed in One Shot TOP10 Chemically Competent E. coli (Invitrogen). Plasmid DNA was prepared using the EndoFree plasmid MEGA prep kit (Qiagen, Valencia, CA). Recombinant protein expression was carried out at the SAIC Advance Research Facility (Frederick, MD). Briefly, human embryonic kidney cells (HEK293E; American Type Culture Collection, Manassas, Virginia) were transfected with 1 mg of plasmid DNA and supernatants were collected 72 h after transfection and shipped frozen to our laboratory for protein purification. Recombinant LuloHya was purified by affinity chromatography followed by size-exclusion chromatography, using Nickel-charged HiTrap Chelating HP and Superdex 200 10/300 GL columns, respectively (GE Healthcare Life Science, Piscataway, NJ). All protein purification experiments were carried out using the AKTA purifier system (GE Healthcare Life Science, Piscataway, NJ). Purified protein was separated in a NuPAGE Novex 4–12% Bis-Tris Protein Gels (Life Technologies) and visualized by Coomassie stain. Protein identity was verified by Edman degradation at the Research Technologies Branch, NIAID, NIH.
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5

3T3-L1 Fibroblast Differentiation and Cell Line Culture

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3T3-L1 fibroblasts obtained from the Howard Green Laboratory (Harvard Medical School) were cultured in high glucose Dulbecco’s modified eagle medium (DMEM) (Gibco by Life Technologies) supplemented with 10% (v/v) fetal bovine serum (FBS) (Gibco by Life Technologies), and 1× GlutaMAX (Gibco by Life Technologies) at 37°C and 10% CO2. Cells were differentiated into adipocytes as described previously (Fazakerley et al., 2015 (link); Norris et al., 2018 (link)) and used for experiments 7–12 days after initiation of differentiation. 3T3-L1 adipocytes stably expressing FLAG-W80A or FLAG-W80A-T309A Akt2 were generated using retrovirus as previously described and characterised previously (Kearney et al., 2019 (link)). HEK293E, HeLa, and HCC1937 cell lines were obtained from the American Type Culture Collection and grown in the medium described above to culture 3T3-L1 cells. MCF7 cells were a gift from Associate Prof. Jeff Holst (Centenary Institute) and were validated by STR. Cells were maintained in Minimum Essential Media (Gibco by Life Technologies Cat#10370–021), with the addition of 10% (v/v) FBS, 1× GlutaMAX, and 1 mM sodium pyruvate (Gibco by Life Technologies) at 37°C and 5% CO2. Cells were routinely tested for mycoplasma contamination and found to be contamination-free.
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6

Cell Line Maintenance Protocols

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Human embryonic kidney 293E (HEK293E), HCT-116, HT-29 (colon cancer), HepG2 (liver cancer), PC3 (prostate cancer), and CT26 (mouse colon cancer) cell lines were purchased from the American Type Culture Collection (ATCC; Manassas, VA, USA). SNU-398 (liver cancer) and SNU-638 (gastric cancer) cell lines were purchased from the Korean Cell Line Bank (KCLB; Seoul, Korea). HEK293E and HepG2 cells were maintained in DMEM with 10% fetal bovine serum (FBS) at 37°C in 5% CO2. HCT-116, HT-29, PC3, SNU-398, SNU-638, and CT26 cells were maintained in RPMI1640 with 10% FBS at 37°C in 5% CO2. The stable SNU-449Cp (TM4SF5-low), SNU-449Tp, and SNU-449T7 (both highly TM4SF5+) liver cancer transfectant cell lines were maintained as previously described.7 (link) Luciferase-expressing SNU-449T7 cells (SNU-449T7-luc) were previously described.10 (link) C8161 cells (melanoma) were a kind gift from Dr. C.-R. Jung (Korea Research Institute of Bioscience and Biotechnology [KRIBB], Daejeon, Korea).31 (link)
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7

Cell Culture Conditions for Immune Assays

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A549, MKN45, MHCC-97 H, and HEK293E cells were obtained from American Type Culture Collection, and CHO/hPD-1 EXD (extracellular domain) cells were generated in our laboratory. HEK293E cells were cultured in FreeStyle™293 Expression Medium (Gibco, NY, USA). The hPBMCs and T cells were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum (FBS) (Gibco, NY, USA) and IL-2 (10 ng/mL) (Selleckchem, TX, USA). Other tumor cell lines were cultured in RPMI 1640 or Dulbecco’s modified Eagle’s medium (Sigma-Aldrich, MO, USA) supplemented with 10% FBS and 1% penicillin/streptomycin (Hyclone, Shanghai, China) at 37°C and 5% CO2.
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8

Culturing Various Cell Lines

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Human embryonic kidney 293E (HEK293E) cells (American Type Culture Collection (ATCC), Manassas, VA, USA) were maintained in DMEM containing 10% fetal bovine serum (FBS) at 37°C in 5% CO2. SW480 (colon cancer; ATCC), SNU-398 (liver cancer), and SNU-638 (gastric cancer; Korean Cell Line Bank, Seoul, Korea) cells were maintained in RPMI1640 containing 10% FBS. HepG2 (liver cancer; ATCC) cells were maintained in Eagle’s Minimum Essential Medium containing 10% FBS. Human umbilical vein endothelial cells (HUVECs) were maintained using an EGM-2 BulletKit (Cambrex BioScience, Walkersville, MD, USA).
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9

Culturing and Maintaining Cancer and Immune Cell Lines

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Human embryonic kidney 293E (HEK293E), SW480, HCT-116, HT-29, LoVo, LS174T, Colo205 (colon cancer), PC3 (prostate cancer), and the CD16-expressing NK-92 (interleukin (IL)-2-dependent Natural Killer (NK)) cell lines were purchased from the American Type Culture Collection (ATCC; Manassas, VA, USA). The SNU-398 liver cancer cell line was purchased from the Korean Cell Line Bank (KCLB; Seoul, Korea). HEK293E and LS174T cells were maintained in DMEM with 10% fetal bovine serum (FBS) at 37ºC in 5% CO2. The SW480, HCT-116, HT-29, LoVo, Colo205, PC3, and SNU-398 cells were maintained in RPMI1640 with 10% FBS at 37ºC in 5% CO2. The stable SNU449Cp (TM4SF5-low), SNU449Tp and SNU449T7 (both highly TM4SF5-positive) liver cancer transfectant cell lines and parental SNU449 cells were maintained as previously described 8 (link). CD16-expressing NK-92 cells were maintained in A-MEM with 12.5% FBS, 12.5% fetal horse serum, and 500 IU IL-2/ml at 37ºC in 5% CO2.
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10

Recombinant Protein Expression and Purification

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All of the DNA sequences were codon-optimized for mammalian expression systems and synthesized by BioBasic Inc. VR2001-TOPO (Vical Incorporated, San Diego, CA, USA). The vector harboring the protein sequences were transformed in One Shot TOP10 Chemically Competent E. coli (Invitrogen, Waltham, MA, USA). Recombinant protein expression was carried out at the SAIC Advanced Research Facility (Frederick, MD, USA). Briefly, human embryonic kidney cells HEK293E (American Type Culture Collection, Manassas, VA, USA) were transfected with 1 mg of plasmid DNA, and supernatants were collected after 72 h of transfection. Recombinant proteins were purified by affinity chromatography followed by size-exclusion chromatography, using Nickel-charged HiTrap Chelating HP and Superdex 200 10/300 GL columns, respectively (GE Healthcare Life Science, Chicago, IL, USA). All protein purification experiments were carried out using the AKTA purifier system (GE Healthcare Life Sciences, Chicago, IL, USA). Purified protein was separated in a NuPAGE Novex 4–12% Bis-Tris protein gels (Thermo Fisher Scientific, Waltham, MA, USA) and visualized by Coomassie stain using the eStain protein stain system (GenScript, Piscataway, NJ, USA). Protein identity was verified by Edman degradation at the Research Technologies Branch, NIAID, NIH.
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