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Eyfp n1

Manufactured by Takara Bio

EYFP-N1 is a plasmid that expresses the enhanced yellow fluorescent protein (EYFP) under the control of a cytomegalovirus (CMV) promoter. The EYFP-N1 plasmid can be used for the expression and visualization of EYFP-tagged proteins in mammalian cell lines.

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4 protocols using eyfp n1

1

Cloning and Tagging of SALL1 Protein

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A full-length (FL) human SALL1 clone was used for high-fidelity PCR amplification and subcloning into EYFP-N1 (Clontech) as truncated (SALL1c.826C>T-YFP) or FL (SALL1FL-YFP) versions. Clones, corresponding to current annotations, were validated by Sanger sequencing (GenBank: NM_002968.2). We exchanged EYFP for two copies of the HA tag to build SALL1FL-2xHA. For BioID vectors, Ac5-STABLE2-neo27 (link) was modified to contain a CAG promoter, a Myc-tagged version of BirA (R118G, human codon optimized), and a multiple cloning site into which SALL1c.826C>T or SALL1FL was inserted.28 (link) Lentiviral expression vectors were prepared in Lentilox-GFS-IRESpuro, a derivative of LL3.7 (GFS = GFP-FLAG-STREP).29 (link)
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2

Genetically Engineered Protein Constructs

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TurboID was a kind gift of A. Ting (Addgene #107171)29 (link). PMLIVaWT and PMLIVa3MAS were previously described21 (link). SUMO1, SUMO2, Ub, RANGAP1 and UBC9 ORFs were amplified from U2OS cell cDNA by high-fidelity PCR (Platinum SuperFi DNA Polymerase; Invitrogen). A GSQ linker (GGGSSGGGQISYASRG) was placed between the C-terminal part of TurboID and the UbLs as well as between the N-terminal part and the substrates. All constructs were generated by standard cloning or by Gibson Assembly (NEBuilder HiFi Assembly, NEB) using XL10-Gold bacteria (Agilent). Depending on the construction, plasmid backbones derived from EYFP-N1 (Clontech/Takara), Lenti-Cas9-blast (a kind gift of F. Zhang; Addgene #52962) or TRIPZ (Open Biosystems/Horizon) were used. After assembly, all vectors were validated by sequencing. Additional details for constructs are described in Supplementary Table 1. Oligonucleotides sequences are shown in Supplementary Table 2. The sequences of representative constructs are in the Source Data file. Cloning details about other constructs are available upon request.
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3

Characterization of phospho-disruptive TRPV1 mutant

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The rat TRPV1 cDNA (in pcDNA3) was generously provided by Prof. David Julius. Site-directed mutagenesis was performed on rTRPV1-pcDNA3 to generate the phospho-disruptive alanine substitution at PKC phosphorylation sites, S502, T704 and S800 (rTRPV1-S502A/T704A/S800A or rTRPV1-TM as denoted in the figure), as described previously (Mohapatra et al., 2003 (link); Loo et al., 2012 (link)). Mutations at only these three residues were confirmed by DNA sequencing of the full cDNA. Human embryonic kidney cells stably expressing the T-antigen (HEK293T) were cultured in DMEM (with Glutamax), 10% FBS and penicillin/streptomycin. Cells were co-transfected with plasmids containing eYFP-N1 (Clontech) and wild-type (WT) or PKC-triple mutant TRPV1, and/or YFP-tagged rat PTH1 (generously provided by Prof. Matthew Mahon) cDNAs using the Lipofectamine-2000™ reagent per the manufacturer’s instructions, as detailed previously (Mohapatra and Nau, 2003 (link), 2005 (link); Loo et al., 2012 (link)). Transfected cells were used for recordings 1–2 days post-transfection.
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4

Cloning and Expression of Receptor Fusion Proteins

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Human cDNA for CB1, CB2 and dopamine D4.2 receptors cloned in pcDNA3.1 were amplified without their stop codons using sense and antisense primers harboring either unique EcoRI and BamH1 sites (CB1R, CB2R) or Xho1 and EcoR1 (D4.2R). The fragments were then subcloned to be in-frame with Rluc into the EcoRI and BamH1 (CB1R) restriction site of an Rluc-expressing vector (pRluc-N1, PerkinElmer, Wellesley, MA), or into the BamH1 and EcoRI (CB2R) or Xho1 and EcoR1 (D4.2R) restriction site of an EYFP expressing vector (EYFP-N1; enhanced yellow variant of GFP; Clontech, Heidelberg, Germany), to create plasmids that express CB1R, CB2R or D4.2R fused to Rluc or YFP on the C-terminal end of the receptor (CB1R–Rluc, CB2R-YFP or D4.2R-YFP). The expression of constructs was tested using confocal microscopy and receptor functionality using the ERK1/2 activation pathway.
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