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Flp in t rex cells

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The Flp-In T-REx cells are a stable, inducible cell line designed for the expression of recombinant proteins. The cells contain a single integrated Flp Recombination Target (FRT) site and a tetracycline repressor, enabling the inducible expression of a gene of interest upon the addition of tetracycline or its analog, doxycycline.

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4 protocols using flp in t rex cells

1

Generating Stable TLR4 Expressing Cell Lines

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The human embryonic kidney (HEK) 293 cells were kindly provided by Dr. J. Chow (Eisai Research Institute, Andover, USA). Flp-In T-REx cells and the Flp-In system were purchased from Invitrogen (CA, USA). T-REx cell lines stably expressing human or mouse TLR4 were made using the Flp-In system according to the manufacturer's instructions. Briefly, human and mouse TLR4 nucleotide sequences were cloned from the pUNO-HA vector into the pcDNA5/FRT expression vector, which was then transfected into Flp-In T-REx cells along with pOG44 expression plasmid for expression of the Flp recombinase. After homologous recombination between the FRT recombination sites in the T-REx cell genome and the pcDNA5/FRT vector, stable cells were selected for hygromycin resistance. All cells were grown in DMEM supplemented with 10% FBS.
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2

Inducible GFP-TNRC6B-FL Cell Line

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Inducible, stably-expressing GFP-TNRC6B-FL HEK 293 cells were made using the Flp-In expression system (Invitrogen). Briefly, the coding sequence for GFP and TNRC6B-FL was cloned into pcDNA5/FRT/TO using the New England Biolabs HiFi DNA Assembly kit to generate a fusion protein construct. This construct was co-transfected with pOG44 into Flp-In TREx cells (Invitrogen) using Lipofectamine 2000. Recombined transformants were selected by treatment with 200 µg/ml hygromycin B over the course of 3–4 weeks. Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 100 unit/ml penicillin, 100 µg/ml streptomycin and 2 mM glutamine in a humidified 37°C incubator with a 5% CO2 atmosphere.
Expression of GFP-TNRC6B-FL was induced by addition of 1 µg/ml tetracycline. Cells were visualized 24 hours post-induction. To visualize Ago2, the coding sequence for mCherry and Ago2 was cloned into pcDNA5/FRT/TO using the NEB HiFi DNA Assembly kit to generate a fusion protein construct. This construct was transfected into the GFP-TNRC6B-FL cell lines using Lipofectamine 2000 concurrent with tetracycline induction. Transfected cells were visualized 24 hours post-transfection.
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3

Establishment of Stable HEK293/TLR4 Cell Lines

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The human embryonic kidney (HEK) 293 cells were provided by Dr. J. Chow (Eisai Research Institute, Andover, USA). HEK293 cells were used in cell activation assays with TLR4 mutants. Flp-In T-REx cells (Invitrogen), derived from HEK293 cells, and the Flp-In system were purchased from Invitrogen (CA, USA). T-REx cell lines stably expressing human or mouse TLR4 (named HEK/TLR4) were made using the Flp-In system according to the manufacturer’s instructions. Briefly, human and mouse TLR4 nucleotide sequences were cloned from the pUNO-HA vector into pcDNA5/FRT expression vector, which was then transfected into Flp-In T-REx cells along with pOG44 expression plasmid for expression of the Flp recombinase. After homologous recombination between the FRT sites in the T-REx cell genome and the pcDNA5/FRT vector, stable cells were selected for hygromycin resistance. Both HEK293 and T-REx cells (HEK293/TLR4) were grown in DMEM supplemented with 10% FBS. Primary human umbilical vein endothelial cells (HUVEC-dLy) were purchased from Lonza. They were cultivated in microvascular endothelial cell growth medium-2 (EGM2-MV BulletKit; Lonza) according to the supplier’s recommendations. THP-1 cells were purchased from Sigma-Aldrich and were cultured in RPMI medium supplemented with 10% FBS.
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4

Generation and Characterization of Engineered Cell Lines

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293 Flp-In T-REx cells (Invitrogen), HEK293FT, MDA-MB-231, HS578T, MDA-MB-468 and IMR90 cells were cultured in Dulbecco's modified Eagle's medium (DMEM, Wisent). MDA-MB-436 and BT549 were cultured in Roswell Park Memorial Institute medium (RPMI, Wisent), and RPE1 was cultured in Dulbecco's modified Eagle's medium F/12 (DMEM F/12, Wisent). All media were supplemented with 10% fetal bovine serum (FBS, Gibco) and 1% penicillin streptomycin (Invitrogen). All cells were maintained at 37°C, 5% CO2 and atmospheric O2. Lentiviruses were produced by co-transfecting HEK293FT cells with plasmids encoding 3xHA-BCL11A160–520, 3xHA-BCL11A-XL, 3xHA- BCL11AΔ160–520, or short hairpin RNA against BCL11A (Mission shRNA pLKO.1 library from Sigma or GipZ shRNA from Dharmacon) with packaging plasmid psPAX2 and envelop plasmid pMD2G. Dicer-substrate siRNA (DsiRNAs) transfections were carried out with two different sequences and cells were collected for the different assays three days after transfection. For doxycline induced knockdown of BCL11A, the sequence of Dicer1 was cloned into a pTRIPZ plasmid. A list of the different shRNA and DsiRNA sequences can be found in Supplementary Table S4. 293 Flp-In T-REx cells were co-transfected with pOG44 (Flp-recombinase expression vector) and a plasmid containing the coding sequence for FLAG-BirA* fusion protein, eGFP-BirA*-FLAG or eGFP-NLS-BirA*-FLAG.
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