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10 protocols using compound c

1

Comprehensive Evaluation of PMF Efficacy

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Chromatographical acetonitrile was bought from Thermo Fisher Scientific (China). Analytical-grade petroleum ether (PE), methanol, and ethyl acetate were bought from Honeywell (USA). Ultrapure water was obtained from a Milli-Q system (Millipore, USA). The other chemicals were analysis-grade chemicals.
RPMI 1640 medium and fetal bovine serum (FBS) were purchased from Gibco (Logan, UT, USA). Cell counting kit 8 (CCK-8) was bought from DOJINDO (Japan). Antibodies (including β-actin, p-AMPK, AMPK, p-S6, S6, p-P70S6K, P70S6K, p-p53, p53, and COX-2) were purchased from Cell Signaling Technology (USA); Compound C (an AMPK inhibitor) was bought from Santa Cruz Biotech (USA). Matrix basement membrane was purchased from Corning Co., Ltd. (USA). The apoptosis-Hoechst Staining Kit was purchased from Beyotime Biotechnology Co., Ltd. (Shanghai, China). Crystal violet reagent was purchased from Damao (Tianjin, China). Ki-67 was purchased from Wuhan Servicebio Technology Co., Ltd. The four PMFs obtained from CRCP were used in DMSO and were stored at −20°C and diluted for use.
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2

Senescence Evaluation by Flow Cytometry

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For flow cytometric analysis of cellular senescence, cells were treated with EB-3D for 72 h and then the medium was replaced with fresh medium containing EB-3D or DMSO for the next 72 h. For rescue experiments, cells were pretreated with 2.5 μM of Compound C (Santa Cruz Biotechnology, Dallas, TX, USA) for 2 h and then treated with EB-3D for the next 3 days. Senescence was evaluated by flow cytometry on a Cytomics FC500 flow cytometer (Beckman Coulter) using di-β-D-galactopyranoside (C12-FDG) (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA), a fluorogenic substrate for β-gal activity, as previously described [49 (link)].
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3

Antibodies for AMPK and Tau Signaling

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Antibodies directed against AMPKα1/α2, ACC, pSer79-ACC were obtained from Cell Signaling Technology. Anti-AMPK α1 and anti-AMPK α2 antibodies were from R&D Systems. Anti p-Thr172AMPK antibody and p-Thr172AMPK blocking peptide were obtained from Santa Cruz Biotechnology24 (link). Anti-actin antibody was from BD Transduction Laboratory. Anti-MAP2, anti-α-tubulin and anti-acetylated-α-tubulin antibodies were from Sigma. Mouse monoclonal antibodies PHF1 (tau pSer396/Ser404)50 (link), CP13 (tau pSer202)51 (link), 2E12 or RZ3 (tau pThr231)5 (link), DA9 (total tau aa102-140)36 (link), DA31 (total tau aa220-240)36 (link) and MC1 (conformation dependent antibody that recognizes only tau in a pathological conformation)52 (link) were previously described. 12E8 monoclonal antibody was obtained from Dr. Seubert (Elan Pharmaceuticals, San Francisco, CA; tau pSer262/356)53 (link). As total tau antibody in the Western-blot experiments, we used tau Cter (homemade well characterized antibody recognizing the 11 amino-acids in the c-terminal part of tau27)54 (link). Tau5 (total tau) and AT180 (tau pThr231) were from Invitrogen.
AICAR, metformin, PD98059, H-89, LY294002 were purchased from Tocris; roscovitin and MARK/Par1 inhibitor from Merck; Compound C was from Santa-Cruz Biotechnology and rapamycin was from Cell Signaling Technology.
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4

Investigating DNA Damage Response Pathways

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Cisplatin (CDDP), resveratrol (Resv), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), pifithrin-α, VP-16 and monoclonal anti-β-actin-HRP were purchased from Sigma-Aldrich (St. Louis, MO, USA). The AMPK inhibitor Compound C (or dorsomorphin), the CK1 inhibitor D4476, the Chk2 inhibitor, anti-rabbit and anti-mouse secondary antibodies, mouse monoclonal anti-phospho-ATM (S1981), rabbit polyclonal anti-ATM, monoclonal anti-p53-HRP (DO-1), and monoclonal anti-BCL-2 were purchased from Santa Cruz Biotechnology (San Diego, CA, USA). Rabbit monoclonal anti-BAX-HRP was purchased from Abcam (Cambridge, UK). Rabbit polyclonal anti-phospho-p53 (S15, S20 and S46) were from Cell Signaling Technology (Beverly, CA, USA).
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5

Modulation of Autophagy and Apoptosis

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CGK733 (sc-202964), 3-MA (sc-205596) and Compound C (sc-200689) were purchased from Santa Cruz Biotechnology. Chloroquine (C6628) and rapamycin (R8781) were purchased from Sigma-Aldrich. GSK2606414 (G797800) was purchased from Tront Research Chemicals Inc. The AMPK (sc-45312), LC3A (sc-106197), LC3B (sc-43390), CHOP (sc-35437) and control (sc-37007) siRNAs were purchased from Santa Cruz Biotechnology. The p-AMPK (4184S), LC3 A/B (4108S, WB/IP), cleaved caspase-3 (9661) and CHOP (2895S) antibodies were purchased from Cell Signaling Technology. The LC3 A/B (ab58610, IF) and PERK (ab65142) antibodies were purchased from Abcam. The AMPK (07–350) antibody was purchased from Millipore (Bedford, MA). The P62/SQSTM1 (P0067) antibody were purchased from Sigma-Aldrich. The Actin (sc-1616) and p21Waf1/Cip1 (sc-65595) antibodies were purchased from Santa Cruz Biotechnology.
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6

Modulation of AMPK and Lipid Metabolism

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THC (purity >98%, by HPLC) was kindly was provided by American Medical Holding, Inc. (New York, USA). DMEM, penicillin-streptomycin, and fetal bovine serum (FBS) were obtained from Gibco BRL (Grand Island, NY, USA). Insulin, β-actin was purchased from Sigma Chemical Co. (St. Louis, MO, USA). The p-AMPK (Thr 172), AMPK, p-ACC (Ser 79), ACC, PPARγ, FAS, FABP4, p-IRS1, p-PI3K, PI3K, p-Akt, Akt, p-FOXO1, FOXO1, p-GSK3β and GSK3β antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). The SREBP-1, PPARα antibody and compound C were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). 2-[N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)amino]-2-deoxyglucose (2-NBDG) was purchased from Cayman Chemical company (Ann Arbor, MI, USA). Sodium oleate was used to create an in vitro model for hepatic steatosis. Briefly, 30.4 mg sodium oleate was dissolved in 1 mL methanol to obtain 100 mM stock solution.
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7

Topical Application of Wound Healing Agents

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MET (Sigma‐Aldrich, St. Louis, MO, USA), RSV (Sigma‐Aldrich), RAPA (Tokyo Chemical Industry, Tokyo, Japan) and Compound C (Santa Cruz Biotechnology, Santa Cruz, CA, USA) were used in this study. Ethanol was selected as the dilution based on previous reports (Xing et al., 2015). The working concentrations of these agents were determined based on previous studies using these agents for skin, which were further confirmed in our preliminary tests using a small population of mice to verify that the concentrations were set at the effective levels for wound treatment: MET at a concentration of 2 μm (Wu et al., 2013), RSV at 50 μm (George et al., 2011), RAPA at 200 nm (Checkley et al., 2011), and Compound C at 10 μm (Cao et al., 2008). Agents were locally applied using pipettes onto the wound beds at 100 μL per time in mice and rabbits and at 225 μL per time in rats. The amounts of agents used were set according to the wound bed areas. CON group accepted 100‐ or 225‐μL ethanol. For chronic application, agents were administered 1 time every day. For intermittent application, agents were administered every other day three times during 1 week followed by a treatment‐free week, according to previous methods (Leontieva et al., 2014).
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8

Isoquercitrin Regulation of AMPK Activity

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Isoquercitrin was purchased from the National Institutes for Food and Drug Control (Beijing, China). Dulbecco’s modified Eagle’s medium (DMEM) and antibiotic solution was obtained from Nacalai Tesque (Kyoto, Japan). AMPK inhibitor, compound C was pucharsed from Santa Cruz Biotechnology, Inc. (Texas, USA), and 5-aminoimidazole-4-carboxamide 1-ribofuranoside (AICAR) was purchased from Cell Signaling Technology, Inc. (Beverly, USA).
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9

Jurkat Cell Drug Sensitivity Assay

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FK866 (sc-205325) was bought from Santa Cruz, Compound C (P5499), Nicotinic acid (N0761), Actinomycin D (A9415), (S)-(+)-Camptothecin (C9911), Cycloheximide (C1988), MG-132 (M7449), Doxorubicin hydrochloride (D1515) and Dexamethasone (D4902) were bought from Sigma-Aldrich, CHS-828 (200484-11-3) from Cayman chemical, Torin 1 (S2827) and Rapamycin (S1039) from Selleck Chemicals, Cisplatin (ALX-400-040) from Enzo Life Sciences and Propidium Iodide Staining Solution from BD Pharmingen. Jurkat cells were treated with drugs dissolved in DMSO at the same cell density (5X105 cells/ml).
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10

Inducing macrophage foam cell formation

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Mouse primary peritoneal macrophages were obtained as described (Ho et al., 2012 (link)). Briefly, 3% thioglycollate was intraperitoneally injected into mice. After 3 days, mice were first anesthetized with a lethal dose of isoflurane and then euthanized by cervical dislocation. Peritoneal macrophages were collected by peritoneal lavage using cold PBS. The cell pellets were obtained after centrifugation at 800 rpm for 5 min. The cells were incubated in 1640 RPMI supplemented with 10% FBS and 1% antibiotics for 3 h and washed three times to remove non-adherent cells. Cells were incubated with ox-LDL (100 μg/ml, Peking Union-Biology, China) for 24 h to induce macrophage foam cell formation. Then, cells were treated with different concentrations of ginsenoside Rb1 (Fleton Natural Products Co. Ltd.) or PBS for another 24 h. Cells were also treated with compound C (CC, 20 μM, sc200689, Santa Cruz Biotechnology, United States) for 2 h following the addition of Rb1 for 24 h. Macrophage foam cells were stained with 0.5% oil red O.
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