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18 protocols using insulin

1

Muscle Stem Cell Differentiation Modulation

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Cells were plated in muscle growth media (fetal bovine serum 0.05 mL/mL, fetuin 50 μg/mL, epidermal growth factor 10 ng/mL, basic fibroblast growth factor 1 ng/mL, insulin 10 μg/mL, and dexamethasone 0.4 μg/mL) for 48 hours before changing to skeletal muscle differentiation media, which is a proprietary serum-free medium containing 10 μg/mL insulin (PromoCell) for 14 days. PMSCs were treated every 3 days with 200 nM of IGF-IR inhibitor PPP, 25 μM of AKT inhibitor LY294002, 10 μM of MEK1/2 inhibitor U0126, or 10 μM of IR inhibitor HNMPA (Santa Cruz Biotechnology) under muscle differentiation conditions. Treatment concentrations for LY294002, U0126, and HNMPA were determined by a dose-response experiment using PMSCs in muscle differentiation media (Supplementary Figure 1). For IGFBP-6 supplementation with the inhibitors, recombinant human IGFBP-6 (ProSpec) was added to the media (375 ng/mL) every 3 days at the time of media change. The dose of IGFBP-6 was based on our previous studies [26 (link), 31 (link)].
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2

PDX Cell Line Culture Protocol

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PDX-derived cell lines were supplied by Charles River from Charles River’s Cancer Model Database (https://compendium.criver.com/ (accessed on 18 November 2021)) and were grown at 37 °C in a humidified atmosphere with 5% CO2 in RPMI 1640 medium supplemented with 10% (v/v) fetal bovine serum and 100 U/mL Penicillin-Streptomycin. PDX cells were used within 10 passages and are listed in Table 1 [16 (link)].
Human dermal fibroblasts (HDF, ScienCell Research Laboratories, Carlsbad, CA, USA) were grown at 37 °C in a humidified atmosphere with 5% CO2 in Fibroblast growth medium 3 supplemented with 10% fetal bovine serum, 100 U/mL Penicillin-Streptomycin, 1 ng/mL basic fibroblast growth factor and 5 μg/mL insulin (PromoCell, Heidelberg, Germany).
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3

Primary Culture of Vascular Smooth Muscle

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Primary cultures of HA-SMCs (PromoCell) were maintained in SMC growth medium 2 containing 5% foetal calf serum (FCS), 0.5 ng/ml epidermal growth factor, 2.0 ng/ml basic fibroblast growth factor and 5μg/ml insulin (PromoCell). The cells were grown in 5% CO2 at 37°C in medium renewed every 3 days. Confluent cells were detached by trypsin/EDTA and subcultured with a split ratio 1:2. HAoSMC were used between 2 and 5 passages.
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4

Adipocyte-Containing Spheroid Generation

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For the generation of multicellular spheroids with adipocytes, ASCs were cultured in adipogenic differentiation medium consisting of growth medium with insulin (final concentration 1.7 µM; PromoCell, Heidelberg, Germany), dexamethasone (1 µM; Sigma-Aldrich), 3-isobutyl-1-methylxanthine (IBMX, 500 µM; Serva-Electrophoresis, Heidelberg, Germany), and indomethacin (200 µM; Sigma-Aldrich). Cells were differentiated in conventional 2D culture for 14 days prior to detachment and subsequent spheroid formation. Successful differentiation was verified by qRT-PCR of adipogenic marker genes and determination of intracellular triglyceride content. Adipocyte-containing mono- and co-spheroids were generated as described above for ASCs.
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5

Lung Samples from IPAH Patients

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Lung samples were collected from IPAH patients and individuals without PAH (mentioned as Donors) according to the protocol approved by the ethics committee at Faculty of Human Medicine of the University Hospital Giessen (Giessen, Germany) according to European IPS registry (AZ 111/08) and DZL Biobank (58/15) and in accordance with national law and with Good Clinical Practice/International Conference on Harmonization Guidelines. Tissues were obtained during lung transplantation. Human tissue donation was approved by the ethics committee of the University Hospital Giessen in agreement to the principles stated in the Declaration of Helsinki. Patients with IPAH had a mean age 35.38 ± 10.85 (years ± SD). Control individuals had a mean age 43.70 ± 10.81 (years ± SD) [24 (link)].
Human PASMCs were cultured in smooth muscle cell (SMC) growth medium-2 (SmGM-2) with inclusion of the supplement mix, containing 5% fetal bovine serum, basic fibroblast growth factor (2 ng/mL), epidermal growth factor (0.5 ng/mL), and insulin (5 μg/mL) (PromoCell GmbH).
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6

Establishment of Patient-Derived Cell Lines

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Patient-derived cells were dissociated from solid biopsies through mechanic grinding followed by enzymatic digestion using a 0.1% collagenase mixture for 1−2 h at 37 °C under gentle agitation. The cell mixture was then passed through a 100 μm mesh, and the collagenase solution was replaced by fresh culturing medium.
Most sarcoma cells were grown in Dulbecco’s modified Eagle’s medium/Ham’s nutrient mixture F12 (DMEM/F12) supplemented with 15% fetal bovine serum (FBS), non-essential amino acids, penicillin and streptomycin. Angiosarcoma cells were cultured in endothelial cell media containing vascular endothelial growth factor (VEGF), insulin growth factor (IGF) and basic fibroblast growth factor (FGF). Muscle cells were grown in skeletal muscle cell media containing 5% fetal calf serum, basic FGF, insulin, and dexamethasone (Promocell, Germany).
Ewing’s sarcoma (ES), alveolar rhabdomyosarcoma (aRMS) and angiosarcoma samples were obtained by fine needle aspiration (FNA) from palpable tumours. The content of tumour cells in the FNA biopsy was assessed on site by microscopic evaluation of Grunewald−Giemsa-stained FNA smears prior to in vitro cultivation.
Logarithmic growing patient-derived cells (PDC) were established within a range from 2 days to 18 weeks depending on the biopsy size, cell viability and histological subtype.
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7

Cultivation of Uterine Smooth Muscle and Leiomyoma Cells

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Human uterine smooth muscle cells (also known as HUt-SMC [PromoCell, Heidelberg, Germany]),will be identified as commercial primary myometrial cells, and abbreviated as cpMYO) were derived from human myometrium and were grown in smooth muscle cell growth medium 2 and supplemented with 5 % fetal calf serum (PromoCell), 0.5 % epidermal growth factor (PromoCell), basic fibroblast growth factor (PromoCell), and insulin (PromoCell). Human uterine leiomyoma cells (GM10964, will be identified as commercial primary leiomyoma cells and abbreviated as cpLYO) were purchased from Coriell Institute for Medical Research (Camden, NJ, USA), and were cultured in Medium 199 (1x) (Gibco, Grand Island, NY, USA) and 15 % fetal bovine serum (FBS) (Gibco), heparin (Sigma-Aldrich, St. Louis, MO) and endothelial cell growth supplement (ECGS) (PromoCell). All cell cultures were incubated in 5 % CO2at 37 °C. Upon reaching 70–80 % confluence, the cells were passaged using 0.05 % trypsin-EDTA (Gibco).
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8

Culturing Mouse Melanoma and Human Fibroblast Cell Lines

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Mouse melanoma cell line B16F0 (ATCC catalogue number CRL-6322™) was cultured in RPMI 1640 media, containing 10% (v/v) foetal bovine serum (FBS) (Bovogen Biologicals, Melbourne, Australia), 200 mM L-glutamine, 100 U/mL penicillin and 100 μg/mL streptomycin (Life Technologies, CA, USA). Cells were incubated in a T-75 flask at 37 °C, in a 5% CO2 incubator and were split every two days. The normal human dermal fibroblast (NHDF) cell line (PromoCell, Heidelberg, Germany) was cultured in fibroblast basal media 2 (PromoCell, Heidelberg, Germany), containing 2% (v/v) FBS, 1 ng/mL basic fibroblast growth factor and 5 μg/mL insulin (PromoCell, Heidelberg, Germany). Cells were incubated in a T-75 flask at 37 °C, in a 5% CO2 incubator, and split every two days.
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9

Cultivation of Human Nasal Epithelial Cells

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Human nasal epithelial cells (HNEpC; PromoCell) were cultured in Airway Epithelial Cell Growth Medium (basal medium supplemented with BPE, EGF, insulin, hydrocortisone, epinephrine, triiodo-L-thyronine, transferrin and retinoic acid; PromoCell) at 37 °C in a 5% CO2 atmosphere. HNEpC cells at passage 5 were used in the experiments. The cells were plated in 48-well plates (BD Falcon) coated with type I collagen (Corning) at the initial density of 1 × 104 cells/cm2, 24 h prior to the experiments. The growth medium was then changed to the experimental cell culture medium containing nanoparticles or vehicle control (water). The experimental medium consisted of phenol red-free DMEM, prepared from powder using water or a mixture of water and 214 mg L−1 TA-AgNP suspension in water and supplemented with 1 gL−1 glucose, NaHCO3 (Gibco), sodium pyruvate (Lonza), 1% bovine serum albumin (BSA), L-glutamine and P/S (50 units/mL of penicillin and 50 µg/mL of streptomycin). Water (used as vehicle control) was a component of the cell culture medium, not an additive to the medium, and as such, the osmolality of the experimental medium was not compromised. A 48 h incubation in the experimental medium had no adverse effects on the viability of the cells compared to the PromoCell culture medium. Cell culture reagents were from Sigma unless otherwise specified.
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10

Generation and characterization of PXDN-KO and rescue cell lines

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HEK-293-T cells (ATCC, Manassas, VA, USA, CRL-3216), PFHR-9 cells (ATCC, Manassas, VA, USA, CRL-2423) and PXDN-KO PFHR-9 cells (prepared by Cas9 CrispR method in our laboratory earlier [21 (link)]) as well as Resc-wt and Resc-mut cells were grown in Dulbecco's Modified Eagles Medium with glutamine and 4,5 g/L glucose, supplemented with 10% fetal bovine serum (Lonza Group Ltd., Basel, Switzerland), 50 U/mL penicillin and 50 μg/mL streptomycin (Lonza Group Ltd., Basel, Switzerland) in a humidified incubator with 5% CO2 at 37 °C.
PFHR-9-Resc-wt and PFHR-9-Resc-mut cells were prepared from PXDN-KO PFHR-9 cells by transfection with the sleeping beauty transposon system [22 (link)]. Briefly, N-terminally Flag tagged WT PXDN (Resc-wt), or N-terminally Flag tagged and C-terminally V5 tagged Q823W and D826E mutant PXDN (Resc-mut) were cloned into a pSB-puro vector for transfection. Transfected cells were selected for puromycin and kept under selection (1.25 μg/mL puromycin) until one to five passages prior to experiments.
HCSMC (Lonza Group Ltd., Basel, Switzerland) and HAoSMC (kind gift of András Balla) were grown in smooth muscle cell basal medium 2 (PromoCell, Germany), supplemented with 5% fetal calf serum, 5 μg/mL insulin, 2 ng/mL hbFGF, 0.5 ng/mL hEGF (PromoCell, Germany), as well as 50 U/mL penicillin and 50 μg/mL streptomycin (Lonza Group Ltd., Basel, Switzerland).
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