The largest database of trusted experimental protocols

19 protocols using axiovision fluorescence microscope

1

Immunostaining of Rat Islet Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dissociated rat islet cells were plated on poly-L-lysine-coated glass coverslips. The cells were fixed in cold methanol and incubated with phosphate-buffered saline supplemented with 0.5% saponin (Sigma-Aldrich) for 15 min. After 30 min incubation in blocking buffer (phosphate-buffered saline supplemented with 0.5% saponin and 1% bovine serum albumin), the cells were incubated for 1 h at room temperature with primary antibodies at the following dilutions: 1:1,300 rabbit anti-Ki67 (Abcam: #ab15580); 1:500 guinea pig anti-insulin (Abcam: #ab10988). The coverslips were then incubated during 1 h at room temperature with goat anti-rabbit Alexa-Fluor-488 and goat anti-guinea pig Alexa-Fluor-555 diluted at 1:400 (Invitrogen: # A11008 and # A21435. respectively). Before being mounted on microscope glass slides using FluorSave mounting medium (VWR International SA) the coverslips were treated for 10 min at room temperature with Hoechst 33342 (Invitrogen). The cells were visualized with a Zeiss Axiovision fluorescence microscope.
+ Open protocol
+ Expand
2

Monitoring miRNA inhibitor biodistribution

Check if the same lab product or an alternative is used in the 5 most similar protocols
A 5(6)-carboxyfluorescein (FAM)-labelled, non-targeting miRNA inhibitor (10mg/kg; Exiqon, Denmark) was administered via tail vein injection to pregnant mice. Mice received either a single injection on E12.5, with tissue collection 24h later at E13.5 (short treatment), or three separate injections on E12.5, E14.5 and E16.5, with tissue collection at E18.5 (extended treatment). Following terminal cardiac perfusion with PBS to remove unbound inhibitor, tissues were collected for analysis. Organs were snap frozen and stored at -80 ºC or fixed in neutral buffered formalin (4% (v/v); 24h). Sections of frozen tissue were fixed in ice-cold methanol (15 min), washed in PBS (2 X 5 min), mounted in Vectashield mounting medium containing DAPI (4′,6-diamidino-2-phenylindole; Vector Laboratories) and examined on a Zeiss Axiovision fluorescence microscope. Images were captured at the same exposure so that comparisons across samples could be made.
+ Open protocol
+ Expand
3

Angiogenesis Assay with HUVEC

Check if the same lab product or an alternative is used in the 5 most similar protocols
10 μl BD matrigel basement membrane matrix (BD 354230) was pipetted to a 15-well plate (μ-Slide Angiogenesis, ibiTreat), matigel solution formed gel within 30 minutes incubation time at 37°C. Harvested HUVEC cells were suspended in a concentration of 200 000 cells/ml with 12.5 μM concentration of compound or vehicle (0.5% DMSO). 50 μl of cell suspension pro well was added onto solidified gel and incubated for 4 to 20 hours. Tube formation was analyzed with Zeiss Axiovision fluorescence microscope. Tube length and branching points were quantified using online service Wimasis Image Analysis (n = 5).
+ Open protocol
+ Expand
4

Visualizing Cardiac Cell Proliferation and Morphology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cardiomyocyte cultures and heart tissue sections were fixed in 4% paraformaldehyde (PFA) permeabilized with 0.25% Triton X-100, and processed for immunostaining. The stained cultures and tissue sections were observed using an Axiovision fluorescence microscope (Carl Zeiss) and images were acquired at ×40 magnification using a CCD camera. Cardiomyocyte proliferation was quantified by counting BrdU- or Aurora B-positive cardiomyocytes on the acquired images. The cardiomyocyte size was determined by measuring their cross-sectional area using the NIH ImageJ software. Control and resected zebrafish hearts were dissected, fixed at appropriate time points in 4% PFA, and cryopreserved in 30% sucrose/phosphate-buffered saline. Twelve micrometer-embedded frozen sections were stained with haematoxylin and eosin for light microscopy histology examination.
+ Open protocol
+ Expand
5

Mitochondrial Membrane Potential Assay in Placental Explants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Term placental explants were transfected with NT or p32-specific siRNA sequences and cultured for 72 h, then were subjected to a pulse-chase experiment. Explants were incubated with MitoTracker Red CMXRos (10 nM; Life Technologies) for 6 h to allow passive transfer into the syncytium, then were transferred to fresh culture medium for a further 18 h to allow accumulation of dye in the mitochondria to occur (i.e. up to 96 h post-transfection). MitoTracker Red CMXRos is a mitochondrial membrane potential-sensitive, red fluorochrome that accumulates in active mitochondria (Pendergrass et al., 2004 (link)). Explants were washed in PBS, fixed in neutral buffered formalin [4% (v/v); 24 h] and embedded in Optimal Cutting Temperature cryopreservation medium (RA Lamb; UK). Tissue sections (10 µm) were fixed in ice-cold methanol, washed twice in PBS (2 × 5 min), mounted with Vectashield mounting medium containing 4′,6-diamidino-2-phenylindole (DAPI; Vector Laboratories, UK) and visualized using a Zeiss Axiovision fluorescence microscope. Images were captured at the same exposure so that comparisons across samples could be made.
+ Open protocol
+ Expand
6

TUNEL Staining of Rat β-Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
TUNEL staining on rat β-cells was performed 48 h after transfection using the TMR red In Situ Cell Death Detection Kit (Roche) combined to polyclonal guinea pig anti-insulin (dilution 1:40, PA1-26938 Invitrogen) followed by incubation with goat anti-guinea-pig AlexaFluor 488 antibody (dilution 1:400, A11073 Thermofisher). Cell nuclei were stained with Hoechst 33342 (1 μg/ml, Invitrogen). Coverslips were mounted on microscope glass slides with Fluor-Save mounting medium (VWR International SA) and were visualized with a Zeiss Axiovision fluorescence microscope. A minimum of 103 cells were counted per condition. Incubation for 24 h with a mix pro-inflammatory cytokines (1 ng/mL IL-1β, 10 ng/mL TNF-α and 30 ng/mL IFN-γ) was used as positive control. Experiments were performed in single replicates.
+ Open protocol
+ Expand
7

Fluorescence Microscopy Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Imaging was performed using a Zeiss AxioVision fluorescence microscope and Zeiss Axiovision software, Zeiss LSM-510 Meta, LSM-800 and LSM 880 confocal microscopes and Zeiss Zen Blue acquisition software, or using a Nikon A1 Confocal Laser Microscope System NIS-Elements software. Images were processed with Imaris and Adobe Photoshop software. Imaris colocalization function was used to produce pictures showing p-MLC2 (Figure 4b), vinculin (Figure 4c) or paxillin (Figure 4—figure supplement 1b) staining that is associated with F-actin staining.
+ Open protocol
+ Expand
8

Quantifying Bacterial Adhesion on Titanium Surfaces

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescence microscopy was used to quantify the number of bacteria that adhered to the surface. Sterilized Ti, NT, NT-S1, and NT-S2 were placed in 24-well plates. 1 ml of the prepared bacterial culture was added to each well. The well plates were placed in a sterile plastic bag and stored in a 37°C incubator for 6 and 24 h periods.[6 (link)] After the incubation period was complete, the NBM was removed from each well and the surfaces were rinsed three times with sterile phosphate buffer solution (PBS). The surfaces were then moved to a clean 48-well plate. The fluorescence stain mixture was prepared by adding 3 µl of propidium iodide (Fisher Scientific, referred to as PI) and 3 µl of Syto 9 stain (Fisher Scientific) per 1 ml of sodium chloride solution.[6 (link)] 300 µl of the stain solution was added to each well with the surfaces. The well plates were incubated for 20 mins at 37°C, at which point the stain solution was removed and the surfaces were washed once more with PBS.[6 (link)] The surfaces were then imaged with a Zeiss Axiovision fluorescence microscope. ImageJ was used to calculate the number of live and dead bacteria on different surfaces.
+ Open protocol
+ Expand
9

Pancreatic Islet Cell Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Animals were killed and the pancreases fixed in 10% neutral buffered formalin (Sigma-Aldrich) for 24 h and embedded into paraffin for sectioning. The slices were stained using the following primary antibodies: 1:500 rabbit anti-Ki67 (Abcam: # ab15580), 1:200 guinea pig anti-insulin (Abcam: # ab7842), 1:200 rabbit anti-glucagon (Abcam: # ab10988). Goat anti-rabbit Alexa-Fluor-488, goat anti-guinea pig Alexa-Fluor-555 and goat anti-mouse Alexa-Fluor-555 diluted at 1:400 (Invitrogen: # A11008, # A21435 and # A21422, respectively) were used as secondary antibodies. TUNEL staining was performed using the In Situ Cell Death Detection Kit (Roche). Cell nuclei were visualized with Hoechst 33342. Images were collected using a Zeiss Axiovision fluorescence microscope.
+ Open protocol
+ Expand
10

Cellular Uptake of Doxorubicin-Loaded Nanoparticles

Check if the same lab product or an alternative is used in the 5 most similar protocols
The cellular uptake of doxorubicin delivered with Au@PEG-INU NPs was evaluated by fluorescence microscopy analysis. Cells were added to 8-well glass bottomed slides at a concentration of 2 × 104 per well and allowed to adhere overnight. Au@PEG-INU/Doxo and free doxorubicin were added at a final concentration of 40 μg mL–1 of Au0, corresponding to ∼4 μg mL–1 doxorubicin, and cells were incubated for either 4 h, 24 h or 48 h. After each incubation time, cells were washed using PBS and fixed using 4% formaldehyde at room temperature for 20 minutes followed by washing with PBS. Cells were stained first for the nucleus using 4′,6-diamidino-2-phenylindole (DAPI) diluted 1/600 in cell media, and then for the membrane using wheat germ agglutinin-Alexa Fluor® 647 conjugate (WGA647) (1/200 in PBS). Both incubations were carried out at room temperature for 20 min followed by extensive washing. Cells were viewed using a Zeiss AxioVision fluorescence microscope with transmitted light and filters for DAPI, plasma membrane and doxorubicin. To study the tumor selectivity of Au@PEG-INU/Doxo, A549, MDA.MB.435s or MCF-7 cells were co-cultured with normal epithelial cells and/or fibroblasts in glass bottomed 96-well plates (Ibidi; 1.5 × 104 per well) and the passive targeting and uptake of doxorubicin and Au@PEG INU/Doxo were imaged (cf. SI 3.2, ESI).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!