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76 protocols using p jnk

1

Protein Expression Analysis Protocol

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In this study, proteins were extracted using a protein extraction kit (Sangon Biotech), and the bicinchoninic acid (BCA) assay (Sangon Biotech) was used to determine the total protein content. After denaturation for 5 min, total proteins were separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Burlington, MA) via a constant current flow at 200 mA. Subsequently, the PVDF membranes were incubated with Bcl-2 (1:10,000), Bax (1:2000), Caspase-3 (1:5000), M-CSF (1:1000), RANKL (1:3000), OPG (1:3000), p-p65 (1:1000), p65 (1:1000), p-p38 (1:1000), p38 (1:5000), p-JNK (1:1000), JNK (1:1000), p-AKT (1:2000), AKT (1:2000), p-ERK (1:1000), ERK (1:1000), RANK (1:2000), NF-κB (1:1000), NFATc1 (1:10,000), and c-Fos (1:1000) antibodies (Abcam, Cambridge, MA) for 12 h at 4°C. TBS buffer was used to wash the PVDF membranes, and secondary antibodies (Abcam) were added and incubated at room temperature for 1 h. After the membranes were washed three times, chemiluminescent reagents were added, and the grayscale values of the bands were analyzed using ImageJ software. Each experiment was independently repeated 3 times. GAPDH was used to quantify the expression of various proteins.
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2

Western Blotting of Cell Signaling Proteins

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Western blotting was performed using whole cell lysates. Aliquots of total protein (20-50 μg per lane) were electrophoresed on a 10% SDS-polyacrylamide gradient gel and transferred to nitrocellulose membranes (Millipore, Bedford, MA). The membranes were incubated at 4 °C overnight with anti-GAPDH, MYC, c-Jun, p-c-Jun, c-Fos, p-c-Fos, JNK, p-JNK, or Igκ monoclonal antibody (all purchased from Abcam, Cambridge, MA). After rinsing in buffer wash, the membranes were incubated with a horseradish peroxidase-conjugated secondary antibody (Santa Cruz Biotechnology, Dallas, TX) diluted 1:10,000-30,000, followed by development with enhanced chemiluminescence reagents (Amersham, Little Chalfont, UK).
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3

Immunohistochemical Analysis of Signaling Pathways

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Slices were deparaffinized by Xylol, followed by rinse with phosphate-flushing fluid. After microwave-treated antigen retrieval, the samples were cooled below 35°C at room temperature. The slices were then incubated with 3% H2O2 at room temperature for 15 min. After that primary antibodies against P-P38 (1 : 100)/P-JNK (1 : 100)/C-fos (1 : 50)/γ-GCS-h (1 : 100) (Abcam, Cambridge, UK)/P-ERK (1 : 400)/C-jun (1 : 400) (Cell Signaling Technology, Boston, MA) were dripped into the samples and samples were incubated at 4°C for 24 h. After reheating at 37°C for 1 h, the respective secondary antibodies were added for incubation at 37°C. DAB coloring was then performed, and cell nucleus was redyed with Harris hematoxylin. The samples were dehydrated until becoming transparent and were sealed with neutral balsam. The slices were observed under a light microscope. Five different random views of each slice were observed. A semiquantitative analysis on integrated optical density (IOD) was conducted by HIS-IPP (Image Pro Plus 6.0) software.
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4

Role of PCSK9 in Ox-LDL-Induced Endothelial Cell Apoptosis

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The human umbilical vein endothelial cell (HUVEC) line EAhy926 was obtained from the Institute of Pharmacology, Medical University of Tianjin (Tianjin, China). Ox-LDL was purchased from Xinyuan Jiahe Biotechnology (Beijing, China). Basic Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum were purchased from Invitrogen (Thermo Fisher Scientific, Inc., Waltham, MA, USA). RNase inhibitor and Moloney murine leukemia virus reverse transcriptase was purchased from Takara Biotechnology Co., Ltd. (Dalian, China). Monoclonal antibodies against PCSK9, B-cell lymphoma 2 (Bcl-2), bcl-2-like protein 4 (Bax), caspase-3, p38, phosphorylated (p)-p38, extracellular signal-regulated kinases (ERK), p-ERK, c-Jun N-terminal kinases (JNK) and p-JNK were purchased from Abcam (Cambridge, MA, USA). SYBR Green PCR Premix was purchased from Biocentury TransGene (Beijing, China). Annexin V fluorescein isothiocyanate (FITC) apoptosis kit was purchased from BD Biosciences (Franklin Lakes, NJ, USA). The flow cytometer (version, BDFACS Verse) was purchased from BD Biosciences and FlowJo software version 7.6 (FlowJo, LLC, Ashland, OR, USA) was used. The lentiviral packaging system, containing helper plasmids and target plasmids, was purchased from CWBIO (Beijing, China).
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5

Immunohistochemical Analysis of Cellular Markers

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The expression levels of Ki-67, cleaved caspase-3, Beclin1, LC3B-II, CHOP, GRP78, p-JNK, and p-c-jun in tumor tissues were measured by IHC analysis according to the protocols previously described [25 (link)]. Briefly, 4-mm consecutive sections were deparaffinized in xylene, rehydrated in a graded ethanol series, and submerged in EDTA antigenic retrieval buffer for 15 min in a microwave oven. The sections were treated with 3% hydrogen peroxide in absolute methanol for 20 min to block endogenous peroxidase activity. Then, 5% BSA was applied for 15 min to prevent non-specific binding. The sections were incubated overnight at 4 °C with primary antibodies. Ki-67 (1:150), cleaved caspase-3 (5 μg/ml), Beclin1 (1:200), LC3B-II (1 μg/ml), CHOP (1:100), GRP78 (1 μg/ml), p-JNK (1:100) and p-c-jun (1:100) were purchased from Abcam (Cambridge UK). After incubation with the secondary antibody, the visualization signal was developed with 3,30-diaminobenzidine tetrachloride.
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6

Molecular Mechanisms of Pyroptosis Regulation

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D-glucose and the JNK inhibitor SP600125 were obtained from Sigma (St. Louis, USA). The RPMI 1640 medium was purchased from Thermo Fisher (Carlsbad, USA) and DMEM-F12 medium was obtained from Corning (Steuben County, NY, USA). Fetal bovine serum (FBS) was purchased from GIBCO Invitrogen (Carlsbad, CA, USA). IFN-γ was obtained from MedChem Express (New Jersey, USA). The antibodies against GSDMD, GSDMD-N, JNK, and p-JNK were purchased from Abcam (Cambridge, UK), while the antibody against cleaved caspase-3 was obtained from Cell Signaling Technology (Beverly, USA). The antibodies against synaptopodin, Bax, Bcl-2, SOD2, TNF-α, IL-1β, IL-6, and β-actin were purchased from Proteintech (Chicago, USA).
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7

Investigating UPR Signaling Pathways

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TMF was prepared as described previously (1 ). Tunicamycin (TM) was obtained from Sigma Chemicals (St. Louis, MO). Dulbecco’s modified Eagle’s minimum essential medium (DMEM), fetal bovine serum (FBS), penicillin, and streptomycin were obtained from Gibco (Life Technologies, Grand Island, NY). IRE1α, XBP1S, CHOP, JNK, p-JNK, Bcl-2, caspase-3, and GAPDH monoclonal antibodies and the peroxidase-conjugated secondary antibody were purchased from Abcam (Cambridge, UK).
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8

Screening of Novel Compounds in Cancer Cell Lines

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B16, HepG2, A549, SW620, MCF-7 and Hela cells were obtained from ATCC and maintained by State Key Laboratory of Biotherapy, Sichuan University in DMEM medium supplemented with 10% fetal bovine serum (FBS, GIBCO, Australia). MTT was purchased from Sigma-Aldrich. Antibodies against hsp90α, stat3 were purchased from Genetex. Antibodies against Bcl-2, Bim, caspase-3, caspase-8, caspase-9, FasL, p27, c-myc, N-cadherin, EGFR, pEGFR(T1068), pEGFR(T1173), C-Raf, pC-Raf, ERK1/2, pERK1/2, Akt, pAkt(S308), pAkt(S473), P90RSK, pP90RSK, Met, pMet, PI3K, B-Raf, pB-Raf, hif1-α were purchased from Cell Signaling Technology. Antibodies against poly polymerase (PARP), FasL, JNK, pJNK, Met, pMet were purchased from Abcam. Antibodies against p21, β-actin, cytochrome c, Bad, Bax, E-cadherin, vimentin, MMP2, MMP9, ZEB1, β-catenin, hsp90β, hsp70, p53, mdm2, cdk2, cdk4, cdk6, cdc37, MNK1, ERK5, GAPDH and Secondary antibodies (HRP-conjugated sheep anti-rabbit antibodies or HRP-conjugated sheep anti-mouse antibodies) for western blot were obtained from Proteintech. Protein A/G Mix Magnetic Beads for Immunoprecipitation were purchased from Millipore. The detailed synthesis, characterization and in vitro biological procedures of compounds 8a–n were described in Supplementary materials.
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9

Protein Expression Analysis by Western Blot

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Protein extracts were boiled for 5 min in SDS sample buffer, separated using SDS-PAGE, and transferred onto polyvinylidene difluoride membranes (Immobilon™-P, MerckMillipore, Billerica, MA, USA). The membranes were probed with the following primary antibodies: rabbit anti-MMP-2 (1:1000; Novus Biologicals, Littleton, CO, USA), mouse anti-MMP-9 (1:300; Abcam, Tokyo, Japan), Akt (1:1000; Santa Cruz, California, USA), pAkt (1:1000; Santa Cruz), p65 NF-κB (1:1000; Santa Cruz), IкB-α (1:1000; Santa Cruz), ERK1/2 (1:1000; Abcam, Cambridge, UK), pERK1/2 (1:1000; Abcam), p38 (1:1000; Abcam), p-p38 (1:1000; Abcam), JNK (1:1000; Abcam), pJNK (1:1000; Abcam), c-Fos (1:500; Santa Cruz), c-Jun (1:500; Santa Cruz), iNOS (1:1000; Santa Cruz), and mouse anti-β-actin (1:10,000; Merck). All immunoreactive proteins were detected using ECL™ Western Blotting Detection Reagent (GE Healthcare, Buckinghamshire, UK).
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10

Analyzing Spinal Cord Protein Profiles

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After injecting an overdose of urethane, rat L4–L5 spinal segments were removed immediately, cut into ipsilateral and contralateral quadrants, frozen in liquid nitrogen and stored at −80 °C for further analysis. The samples were homogenized using an ultrasonic cell processor in SDS sample buffer containing proteinase inhibitors and PMSF. Equal amounts of the protein sample were separated by performing 10% tris–tricine SDS–PAGE and were transferred onto PVDF membranes (Millipore). The membranes were blocked with 5% nonfat milk for 2 h at RT. The membranes were incubated overnight at 4 °C with rabbit anti-IFN-γ antibody (1:500 dilution; Abcam), JNK (1:1000 dilution; Abcam), pJNK (1:1000 dilution; Abcam) or goat anti-GFAP antibody (1:10000 dilution; Sigma) and then with HRP-conjugated secondary antibodies (1:1000 dilution; Pierce) for 2 h at RT. Bands were developed using enhanced chemiluminescence (Pierce) and were visualized using ChemiDoc XRS system (Bio-Rad). All western blotting were performed at least 3 times, and similar results were obtained from all the analyses. The density of band area was quantified using Image Lab 3.0. A same-sized square was drawn around each band to measure its density, and the background of that band was subtracted. GAPDH expression was used as a loading control for protein expression.
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