The largest database of trusted experimental protocols

95 protocols using jem 2000ex

1

Isolation and Characterization of Propylene-Assimilating Bacteria

Check if the same lab product or an alternative is used in the 5 most similar protocols
Surface seawater was collected from Tokyo Bay, Japan in 120-mL glass vials and cultured in −C liquid medium with propylene. After growth was observed in liquid medium, propylene-assimilating bacteria were purified by serial dilutions with liquid medium and cultured in 96-well plates with propylene. This isolation procedure was repeated five times, at which point the purity of the isolated strain was confirmed by microscopic observations. A transmission electron microscopy (TEM) analysis of purified strains, which were cultured at 22°C for 20 d, was performed by negative staining using JEM-2000EX (Japan Electron Optics Laboratory, Tokyo, Japan). Assessments of DNA G+C contents, cellular fatty acid profiles, and ubiquinones were performed by TechnoSuruga Laboratory (Shizuoka, Japan). Enzyme activity experiments were performed with API ZYM (BioMérieux, Lyon, France) according to the manufacturer’s instructions.
+ Open protocol
+ Expand
2

Characterization of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
A-ENLs were examined using a JEM-2000EX operated at 100 kV (Japan Electron Optics Laboratory, Tokyo, Japan) at the Hanaichi UltraStructure Research Institute (Aichi, Japan). The Nanoparticle Characterization System (NanoSight, Malvern Instruments, UK) was used to determine the size distribution of extracellular vesicles (EVs).
+ Open protocol
+ Expand
3

Characterizing Surface Morphologies of Nanomaterials

Check if the same lab product or an alternative is used in the 5 most similar protocols
The surface morphologies of RPTN, RCPTN, and RPN were analyzed using transmission electron microscopy (TEM; testing conditions: accelerating voltage, 120 kV; JEM-2000EX; Japan Electron Optics Laboratory Co. Ltd, Tokyo, Japan) and scanning electron microscopy (SEM; testing conditions: accelerating voltage, 10 kV; SS 550; Shimadzu, Tokyo, Japan). To prepare samples for TEM, a small quantity of NP suspensions was placed onto copper grids covered with nitrocellulose membranes. One drop of 2.5% phosphotungstic acid was added to the surface of the copper grids. After 3 minutes of staining, any extra liquid was removed, and the copper grids were air-dried at room temperature and then loaded into TEM for imaging.23 (link) To prepare samples for SEM, the NP-loaded surface was coated with a thin layer of gold before measurements were performed.
+ Open protocol
+ Expand
4

Characterization of Enzymatically Hydrolyzed Bamboo LCNFs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Characterization was performed using the supernatants after the centrifugation of the LCNFs before and after enzymatic hydrolysis. Polarizing optical microscopy (POM, Nikon Optiphot-Pol, Nikon Corp., Tokyo, Japan) and TEM (JEM-2000EX, JEOL, Japan) were used to observe the morphology of the hydrolyzed products. To observe TEM images, a drop of a diluted bamboo LCNF suspension was deposited on a carbon-coated grid and allowed to dry at room temperature. The length and diameter of individual LCNFs were measured at least 50 times from POM images and TEM images, respectively.
The crystalline characteristics of LCNFs were determined using XRD (RINT 2000, Rigaku Corporation, Tokyo, Japan). For X-ray analyses, disks that were 1 cm in diameter, 0.8 mm in thickness, and 0.1 g in weight were prepared from the freeze-dried samples. Ni-filtered Cu Kα radiation (λ = 0.1542 nm) was employed at an accelerating voltage of 200 kV and a current of 40 mA. The diffracted intensity (I) was determined in the 2θ range of 5°–40° at a rate of 2°/min. The crystallinity index (CrI) was calculated using Segal’s method (formula (1)) [29 (link)].
Crystallinity index(%)= (I200Iamor)I200×100
where I200 is the crystalline intensity and Iamor is the amorphous intensity.
+ Open protocol
+ Expand
5

Transmission Electron Microscopy of PRECs

Check if the same lab product or an alternative is used in the 5 most similar protocols
After treatment with 5 mM Met or NH4Cl for 36 h, PRECs were fixed successively with 1% osmic acid fixation solution and 2.5% glutaraldehyde for more than 2 h. Then, the cells were washed with phosphate buffer (0.1 mM) and dehydrated with a gradually increasing concentrations of acetone. After this, they were coated with epoxy resin, the cell samples were sliced. A transmission electron microscope (JEM-2000EX, JEOL Co, Tokyo, Japan) was applied to collect the electron images [17 (link)].
+ Open protocol
+ Expand
6

Comprehensive Materials Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
The structure was characterized
by XRD using a Bragg–Brentano diffractometer (D8-tools, Germany)
equipped with a Cu Kα (λ = 0.15418 nm) emitting source.
Scanning electron microscope images were taken on a JSM-6700F field-emission
scanning electron microscope from JEOL Co., Japan. TEM, HRTEM, and
SAED were carried out using a JEM-2000EX instrument from JEOL Co.,
Japan. XPS was measured on an Escalab-250 instrument from Thermo Fisher
Scientific, USA with a hemisphere detector and a monochromatic Al
Kα radiation source (1486.6 eV).
+ Open protocol
+ Expand
7

Ultrastructural Analysis of Dioscin-Treated Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The HeLa and SiHa cells (2 × 105 cells/mL) were plated in 6-well plates, treated with dioscin, harvested, and fixed overnight at 4 °C in 2% glutaraldehyde. The samples were implemented as previously described [27 (link)]. The obtained sections were then stained and observed using a transmission electron microscope (JEM-2000EX, JEOL, Tokyo, Japan).
+ Open protocol
+ Expand
8

Comprehensive Characterization of Graphitic Materials

Check if the same lab product or an alternative is used in the 5 most similar protocols
The morphology and structure were characterized by field emission scanning electron microscope (SEM, Hitachi S4800, Tokyo, Japan). The graphitic structure was analyzed by high-resolution transmission electron microscopy (HRTEM, JEM 2000EX, JEOL, Tokyo, Japan). The surface chemical composition was determined by X-ray photoelectron spectroscopy (XPS, Thermo ESCALAB 250XI, Waltham, MA, USA). Raman spectrometer was performed on a Raman Microscope (LabRAM HR800, Paris, France) with YAG solid-state laser under wavelength of 532 nm. An X-Ray Diffractometer (XRD, D8 Advance Bruker, Germany) was used to study the crystallinity. The magnetic properties of samples were examined using a vibratory probe sample magnetometer (VSM-7300, Quantum design Lakeshore, San Diego, CA, USA). The specific surface areas were determined using the Brunauer–Emmett–Teller (BET, MicrotracBEL Corp, Shanghai, China).
+ Open protocol
+ Expand
9

Plasma-Derived Extracellular Vesicle Isolation

Check if the same lab product or an alternative is used in the 5 most similar protocols
EV Extraction Kit (4484450, Invitrogen Life Technologies, CA) was used to extract plasma-EVs. The plasma samples stored at − 80 °C were taken out, and placed in a 37 °C water bath until completely melted. The samples were put on ice, and centrifuged at 2000×g for 20 min to remove cells and debris. The supernatant was harvested and transferred to a new centrifuge tube using a pipette, followed by centrifugation at 10,000×g for 20 min at ambient temperature to remove debris. The supernatant was removed into a new centrifuge tube, which was placed on ice for separation. The obtained precipitate was EVs and stored at − 80 °C.
The morphology of EVs was then observed under a transmission electron microscope (TEM; JEM-2000EX; JEOL, Tokyo, Japan). Nanoparticle tracking analyzer (NS300, Malvern Instruments, Malvern, UK) was used to measure the size distribution of EVs. The expression of EV markers (CD63, CD81, Alix and Calnexin) was detected with the help of western blot analysis, with the used antibodies including anti-CD63 (1:1000, 25682-1-AP, Proteintech ProteinTech Group, Chicago, IL), anti-CD81 (1:1000, 66866-1-Ig, Proteintech), Alix (1:1000, 12422-1-AP, Proteintech) and Calnexin (1:1000, ab133615, Abcam).
+ Open protocol
+ Expand
10

TEM Analysis of Nanoparticle Morphology

Check if the same lab product or an alternative is used in the 5 most similar protocols
The size and shape of nanoparticles were inspected using transmission electron microscopy (TEM: JEM-2000EX; JEOL, Tokyo, Japan) at 80 keV. Images were captured with a Morada 11 megapixel camera (Olympus Soft Imaging Solutions GmbH, Münster, Germany). Droplets of nanoparticles solutions were placed onto formvar-coated copper grids (Agar Scientific, Stansted, UK) and immediately after air-drying the grids were inspected by TEM (Fig 1).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!