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13 protocols using ab76464

1

Protein Quantification and Detection

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Protein samples were prepared and detected using the BCA protein assay kit (Beyotime). Then, an equal amount (20 μg) of protein was used in the Western blot analysis. The primary antibodies used were anti-FGFR1 (ab76464; Abcam, Cambridge, MA. USA) and GAPDH (ab9485; Abcam). The secondary antibody used was anti-Goat anti-Rabbit (ab205718; Abcam). The protein blots were emerged using an enhanced chemiluminescence (ECL) kit (Beyotime).
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2

Western Blot Analysis of FGFR1 Protein

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Total protein was extracted from tissue samples and cells with RIPA lysis buffer containing protease inhibitor (Beyotime). Total protein was separated by using sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE). Thereafter, the separated proteins were transferred to polyvinylidene difluoride (PVDF) membranes (Beyotime), and the membranes were blocked with tris buffered saline tween buffer with 5% skim milk. The membranes were then incubated with primary antibodies, including anti‐FGFR1 (ab76464, 1:500, Abcam) and anti‐GAPDH (ab9484, 1:1000, Abcam). GAPDH was deemed as a loading control. Next, the membranes were incubated with the secondary antibody (ab6721, 1:5000, Abcam). The immunoblots were visualized with enhanced chemiluminescence solution (Beyotime).
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3

Characterization of BCR-FGFR1 Fusion Protein

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Cell cycle and apoptosis analysis was performed as previously described.12 (link) Quantitative reverse transcription polymerase chain reaction (qRT-PCR) and western blotting assays were carried out as described previously.4 (link) Detection of FGFR1 fusion kinase and its variants, used several different anti-FGFR1 antibodies designed against the human FGFR1 sequence; #9740 (Cell signaling, Inc) was raised against a recombinant protein specific to the FGFR1 carboxy terminus, ab76464 (Abcam) was raised against a synthetic peptide corresponding to aa 800 to the C-terminus and ab58516 (Abcam) was raised against a synthetic non-phosphopeptide derived from human FGFR1 around the phosphorylation site of tyrosine 654 (D-Y-YP-K-K). An anti-Myc tag antibody (#05-724, EMD Millipore) was also used to detect exogenous Myc-tagged BCR-FGFR1 fusion protein. ChIP-qPCR was performed with an FGFR1 antibody against total FGFR1 (#9740, Cell signaling) and truncated FGFR1 (ab58516, Abcam), as described previously.13 (link),14 (link) Mutation or truncation of BCR-FGFR1 was generated using the Q5 Site-Directed Mutagenesis Kit (New England Biolabs).
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4

Protein Expression Analysis Protocol

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Total protein was extracted by RIPA lysis buffer (Keygen). After detection of protein concentration, extracted protein was separated with SDS‐PAGE (Beyotime). After transferring onto PVDF membranes (Millipore), the membranes were blocked in non‐fat dried milk (Yili). After that, the membranes were probed with unique primary antibodies: KI67 (ab181255; 1:5000; Abcam), Bax (ab32503; 1:3000; Abcam), multidrug resistance protein (MRP1; ab76464; 1:1000; Abcam), CRABP2 (ab181255; 1:3000; Abcam), and β‐actin (ab8226; 1:1000; Abcam), and then secondary antibody was used for combination with primary antibodies. At last, the combined signals were detected by ECL reagent (Abcam).
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5

Quantitative Western Blot Analysis of FGFR1

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Extraction of total protein of A549 and H1299 cells was performed with RIPA lysis buffer (Beyotime, Shanghai, China), protein concentration was determined by BCA method, and then the protein samples were mixed with loading buffer and denatured in boiling water. Subsequently, 15 μL of protein sample in each group was loaded into each well and the protein was dissolved by SDS-PAGE. After the protein was transferred to PVDF membrane (Millipore, Bedford, MA, USA), the PVDF membrane was blocked with 5% skimmed milk at room temperature for 1 h. Then the primary antibody (rabbit anti-FGFR1 monoclonal antibody, ab76464, Abcam, Shanghai, China, 1:1000) was used to incubate the PVDF membrane at 4°C overnight and then rinsed with TBST 3 times with 5 min each time. The corresponding secondary antibody (goat anti-rabbit IgG, ab205718, Abcam, Shanghai, China. 1:2000) was then applied to incubate the membrane at room temperature for 1.5 h before the membrane. After that, the membrane was rinsed with TBST 3 times with 5 min each time. Next, the protein band was developed employing ECL kit (Beyotime Biotechnology, Shanghai, China), and the gray values of protein bands were quantitatively analyzed utilizing ImageJ (National Institutions of Health, Bethesda, MD, USA). GAPDH was used as the internal reference.
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6

Western Blot Analysis of Protein Expression

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Protein was extracted with lysis buffer (Beyotime, Shanghai, China) and then quantified by BCA Protein Quantitation Kit (Beyotime, Shanghai, China). Equal amounts of protein (30 μg) were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Billerica, MD) Later on. The membrane was blocked with 5% bovine serum albumin (BSA) and incubated with primary antibodies overnight at 4 °C. After incubation with secondary antibodies for 1 h at room temperature, the proteins were detected by enhanced chemiluminescence reagents. Primary antibodies against β-catenin (51067-2-AP), GAPDH (60004-1-Ig), and E-cadherin (20874-1-AP) were purchased from Proteintech Group. Antibodies against LHX2 (ab243030), Vimentin (ab8978), FGF1 (ab179455), ZEB1 (ab203829), FGFR1 (ab76464), FGFR2 (ab109372), FRS (ab183492) and TWIST1 (ab50581) were purchased from Abcam. Antibodies against STAT3 (#9139), Phospho-STAT3 (#9145), ERK (#4695), Phospho-ERK (#4370), AKT (#2920), Phospho-AKT (#4060), Phospho-GSK3 (#5558), Phospho-FGFR (#3471) and Phospho-FRS2 (#3861) were purchased from Cell Signalling Technology.
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7

Characterization of BCR-FGFR1 Fusion Protein

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Cell cycle and apoptosis analysis was performed as previously described.12 (link) Quantitative reverse transcription polymerase chain reaction (qRT-PCR) and western blotting assays were carried out as described previously.4 (link) Detection of FGFR1 fusion kinase and its variants, used several different anti-FGFR1 antibodies designed against the human FGFR1 sequence; #9740 (Cell signaling, Inc) was raised against a recombinant protein specific to the FGFR1 carboxy terminus, ab76464 (Abcam) was raised against a synthetic peptide corresponding to aa 800 to the C-terminus and ab58516 (Abcam) was raised against a synthetic non-phosphopeptide derived from human FGFR1 around the phosphorylation site of tyrosine 654 (D-Y-YP-K-K). An anti-Myc tag antibody (#05-724, EMD Millipore) was also used to detect exogenous Myc-tagged BCR-FGFR1 fusion protein. ChIP-qPCR was performed with an FGFR1 antibody against total FGFR1 (#9740, Cell signaling) and truncated FGFR1 (ab58516, Abcam), as described previously.13 (link),14 (link) Mutation or truncation of BCR-FGFR1 was generated using the Q5 Site-Directed Mutagenesis Kit (New England Biolabs).
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8

Western Blot Analysis of FGFR1 Protein

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Tissue specimens or cells were lysed using radio-immunoprecipitation assay lysis buffer (Solarbio, Beijing, China). A BCA Kit (Solarbio) was used to achieve the quantification of total protein. Equivalent proteins were loaded and isolated by employing 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis. After being transferred onto a polyvinylidene fluoride membrane, 5% skimmed milk was used to block the nonspecific binding sites. The membranes were then added with primary antibodies targeting FGFR1 (ab76464) or GAPDH (ab181602; Abcam, Cambridge, UK) and cultivated at 4°C for 12 h, followed by extensive washing with Tris-buffered saline-tween three times and treatment with a secondary antibody (ab6721; Abcam). The protein bands were detected by applying Pierce ECL western blotting substrate (Pierce).
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9

Protein Expression Analysis by Western Blot

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Protein lysates were prepared using RIPA lysis buffer (Beyotime), and quantified using BCA Protein Assay Kit (Beyotime). Proteins were separated by SDS-PAGE and transferred onto nitrocellulose membranes. Blots were then blocked with 5% non-fat milk and incubated with primary antibodies at 4 °C overnight, followed by the incubation with secondary antibody (31430 or 31460, Invitrogen). Signals were detected using ECL substrate (Beyotime). Primary antibodies used in western blot as follows: anti-GPX4 (1:1000, ab125066, Abcam), anti-SLC7A11 (1:1000, ab175186, Abcam), anti-α-SMA (1:2000, ab124964, Abcam), anti-vimentin (1:1000, ab92547, Abcam), anti-FAP (1:2000, PA5-99313, Invitrogen), anti-FGF5 (1:1000, PA5-80630, Invitrogen), anti-Keap1 (1:3000, ab119403, Abcam), anti-Nrf2 (1:2000, PA5-27882, Invitrogen), anti-HO-1 (1:3000, ab68477, Abcam), anti-FGFR1 (1:500, ab76464, Abcam), anti-FGFR2 (1:1000, ab10648, Abcam), anti-FGFR3 (1:1000, ab133644, Abcam), anti-FGFR4 (1:1000, ab178396, Abcam) and anti-β-actin (1:2000, ab8226, Abcam) antibodies. Uncropped western blots were shown in Supplemental materials.
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10

Western Blot Analysis of Protein Expression

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Proteins were extracted from ~80% confluent cells and quantified using the BCA protein assay. 10 μg of protein samples were separated on 12.5% SDS-PAGE, blotted on PVDF membranes and probed with anti-FGFR1 antibody ab76464 (Abcam, UK) at 1:1000 dilution, anti-E-cadherin antibody ab15148 (Abcam, UK) 1:1000 dilution or with anti-β-actin antibody ab8227 (Abcam, UK) as housekeeping genes. Anti-rabbit IgG antibodies horseradish peroxidase-linked species-specific (GE Healthcare, UK) at 1:2000 dilution was used as secondary antibody.
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