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Red siglo oligos

Manufactured by Thermo Fisher Scientific
Sourced in United States

Red siGLO oligos are a fluorescent labeling reagent used in molecular biology applications. They are designed to facilitate the visualization and tracking of small interfering RNA (siRNA) molecules during transfection and other experimental procedures.

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8 protocols using red siglo oligos

1

miRNA Mimic Transfection in Differentiated mD-Mφ

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MiScript miRNA mimics and inhibitors were purchased from Qiagen. AllStars negative mimics (Qiagen) were used as controls. Transient transfections were performed using Lipofectamine 2000 (Life Technologies) according to manufacturer’s instructions. Day 7 differentiated mD-Mφ were transfected at a final concentration of 50 nM. Red siGLO oligos (Thermo Fisher Scientific, Waltham, MA, USA) were used to confirm successful transfection, with transfection efficiency being greater than 90% as previously reported [9 (link)]. Cell viability was assessed using the CellTiter 96 AQueous Cell Proliferation Assay Kit (Promega, Madison, WI, USA). Viability of all cell culture samples was analyzed 2 hours prior to harvesting of cells/supernatant for subsequent experimental analysis.
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2

Transient Transfection of Viral miRNA Mimics

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Transient transfections were performed using Lipofectaine 2000 reagent (Life Technologies, San Diego, CA, USA) according to manufacturer’s instructions. Red siGLO oligos (Thermo Fisher Scientific, Waltham, MA, USA) were used to determine transfection efficiency. After 36 h, cells were harvested for protein detection or RNA isolation. Cells were transfected with viral miRNA mimics (Qiagen, Gaithsburg, MD, USA) at a final concentration of 15 nM for 36 h. Controls consisted of mock transfected and control mimic (Qiagen) transfected cultures. Levels of viral miRNAs were used to determine transfection efficiency using miScript PCR primer assays as described above.
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3

Transient Transfection of miR-26a-5p in Cell Lines

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Cell culture conditions are described in Supplemental Materials and Methods. Transient transfections were performed using miScript miR‐26a‐5p mimetic, inhibitor or control (Qiagen) or at 20 or 50 nM and Lipofectamine 2000 (Life Technologies, Carlsbad, CA) in human embryonic kidney (HEK293), HOK, PDL‐F and HeLa cells as previously described (Naqvi et al., 2018a (link), 2018b (link)). Red siGLO oligos (ThermoScientific) were used as transfection controls for every experiment. Transfection efficiency data are shown in Figure S1.
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4

miRNA Mimic Transfection in Differentiated mD-Mφ

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MiScript miRNA mimics and inhibitors were purchased from Qiagen. AllStars negative mimics (Qiagen) were used as controls. Transient transfections were performed using Lipofectamine 2000 (Life Technologies) according to manufacturer’s instructions. Day 7 differentiated mD-Mφ were transfected at a final concentration of 50 nM. Red siGLO oligos (Thermo Fisher Scientific, Waltham, MA, USA) were used to confirm successful transfection, with transfection efficiency being greater than 90% as previously reported [9 (link)]. Cell viability was assessed using the CellTiter 96 AQueous Cell Proliferation Assay Kit (Promega, Madison, WI, USA). Viability of all cell culture samples was analyzed 2 hours prior to harvesting of cells/supernatant for subsequent experimental analysis.
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5

MiRNA Mimics and Inhibitor Transfection

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MiScript miRNA mimics (miR-24, -30b, -101, 142-3p, -652-3p, -652-5p, and -1275) and inhibitors were purchased from Qiagen (Germantown, MD, USA). For control, all stars negative mimics (Qiagen) were used. For PKCα knockdown, gene specific and control siRNA were purchased from Sigma (St. Louis, MO, USA). Transient transfections were performed using Lipofectamine 2000 (Life Technologies) according to manufacturer's instructions. Mφ were transfected with mimics or inhibitors at a final concentration of 50 nM while DC, monocytes and PBMCs were transfected at a final concentration of 100 nM. Red siGLO oligos (ThermoScientific, Waltham, MA, USA) were used to determine transfection efficiency.
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6

Transfection Protocol for miRNA-21 Inhibition

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The miRNA-21 inhibitor was purchased from Qiagen, and the all-star negative mimic (Qiagen) was used as a control. According to the transfection reagent instructions, the cells were transiently transfected with Hiperfect Transfection Reagent (Qiagen) at a final concentration of 50 nM. Red siGLO oligos (Thermo Fisher Scientific, Waltham, MA, USA) was used to confirm the transfection efficiency of the cells. The transfection efficiency was greater than 90% and the transfection was considered successful28 (link).
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7

Overexpressing miRNA in Differentiated Macrophages and Dendritic Cells

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miR-30b, miR-142–3p and control miRNA mimic were purchased from Qiagen (Gaithersburg, MD, USA). Transient miRNA overexpression was performed by transfecting miRNA mimics using Lipofectamine 2000 (Invitrogen-Life Technologies Corporation, Carlsbad, CA, USA) according to the manufacturer’s instructions. Day 7-differentiated MΦ or DC were transfected at a final concentration of 50 nM. Red siGLO oligos (ThermoFisher Scientific, Grand Island, NY, USA) were used to determine transfection efficiency.
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8

Viral miRNA Transfection Optimization

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Transient transfections were performed using Lipofectaine 2000 reagent (Life Technologies, San Diego, CA) according to manufacturer’s instructions. Red siGLO oligos (ThermoScientific, Waltham, MA) were used to determine transfection efficiency. After 36 hours, cells were harvested for RNA isolation. Cells were transfected with viral miRNA mimics at increasing concentrations of 10, 20 and 50 nM (to determine dose effects) for 36 hours. We noticed robust (~90%) transfection at 20 nM, therefore, we used the same concentration for most of the experiments unless specified. Controls consisted of mock transfected and control mimic (Qiagen) transfected cultures.
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