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3 protocols using nintedanib bibf 1120

1

Investigating STAT3 Signaling Modulation

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Nintedanib (BIBF 1120) and docetaxel were obtained from Selleck Chemicals LLC (Houston, TX, USA). Silibinin was purchased from Sigma-Aldrich (St. Louis, MO, USA). All reagents were dissolved in sterile dimethylsulfoxide (DMSO) to prepare 10 mmol/L stock solutions, which were stored in aliquots at −20 °C until use. Working concentrations were diluted in culture medium prior each experiment. Antibodies against total STAT3 (124H6, Cat. No 9139), phospho-STAT3 Tyr705 (D3A7, Cat. No 9145S), and phospho-STAT3 Ser727 (Cat. No 9134) were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibodies against β-actin (Clone #2D4H5, Cat. No 66009-1-Ig,) and human recombinant human IL-6 (Cat. HZ-1019-10) were purchased from Proteintech Group, Inc., Rosemont, IL, USA). Lysotracker® Red DND-99 (Cat. No L7528) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Ammonium chloride was purchased from Sigma-Aldrich (Cat. No A9434). Bafilomycin A1 was obtained from Calbiochem (Cat. No 196000).
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2

Comparative Analysis of Tyrosine Kinase Inhibitors

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Total 11 TKIs were tested in this study. DMSO was used as a solvent for the TKIs and also as the negative vehicle control. Pyrimethamine 5 μM was used for positive control. Afatinib (BIBW2992), AG1478, dacomitinib (PF299), erlotinib (OSI-420), gefitinib (ZD1839), lapatinib, neratinib, AZD9291 (osimertinib), pelitinib, and nintedanib (BIBF 1120) were purchased from Selleck Chemicals (Houston, Texas, USA). Dimethyl sulfoxide (DMSO), pyrimethamine, and sunitinib malate (SU 11248) were purchased from Sigma Aldrich (St. Louis, Missouri, USA).
Bovine serum albumin was purchased from Bovogen Biologicals (Melbourne, Australia). Antibodies against β-actin were purchased from Cell Signaling Technology (Beverly, Massachusetts, USA). FITC-conjugated anti-mouse IgG antibody, TRTIC-conjugated anti-rabbit IgG antibody, and horseradish peroxidase-conjugated anti-rabbit or anti-mouse antibodies were purchased from Sigma Aldrich. Mouse Tg563 monoclonal antibody was cloned in our laboratory. PDCD4 (D29C6) XP® anti-rabbit monoclonal antibody was purchased from Cell Signaling.
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3

Characterizing Vemurafenib-Resistant Melanoma Cells

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Isogenic pairs of vemurafenib‐sensitive and vemurafenib‐resistant melanoma cells (M229, M238, M249) were provided by R. Lo. UACC62 vemurafenib‐sensitive (UACC62P) and vemurafenib‐resistant melanoma cells (UACC62R) were provided by Neubig's laboratory. 1205Lu cells were obtained from Rockland. YUMM1.7 mouse melanoma cells were a kind gift from M. Bosenberg (Meeth et al, 2016 (link)). A375DR melanoma cells were provided by S. Shen. Cells were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with 7% FBS (Hyclone) and 1% penicillin/streptomycin. Resistant cells were continuously exposed to 1 μM of vemurafenib. Cell lines were routinely tested for the absence of Mycoplasma by PCR.
Short‐term cultures of patient melanoma cells MM034 and MM099 were generated in the laboratory of Pr G. Ghanem. Culture reagents were purchased from Thermo Fisher Scientific. Vemurafenib (PLX4032), trametinib (GSK1120212), cobimetinib (SB431542, GSK690693), nintedanib (BIBF1120), and staurosporine were from Selleckchem. CP673451 was purchased from Tocris Bioscience. Recombinant human TGF‐β1 was obtained from ImmunoTools. Recombinant human PDGF‐BB was purchased from Peprotech.
Information on all reagents used is provided in Appendix Tables S4–S6.
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