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4 protocols using trypsin

1

Isolation of Primary HNSCC Cell Lines

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The study was approved by the ethical committee of Motol University Hospital, Prague, Czech Republic. All surgical tissue samples were obtained from HNSCC patients after they signed the informed consent documents. Patients were completely clinically examined, and tumour samples were taken from verified HNSCC under general anaesthesia; the inclusion criteria were as follows: histologically confirmed squamous cell carcinoma and no previous oncologic treatment; each tissue specimen underwent pathology quality control. Hematoxylin and eosin-stained sections from each sample were subjected to independent pathology review to confirm squamous cell carcinoma histological consistence. Tumour samples with approximately >60% tumour nuclei and <20% necrosis were considered sufficient for the following analyses. The tissue material harvested during surgery was divided into two pieces, the first was stored in an RNAlater (Ambion, Austin, TX, USA) for later RNA analyses. The second portion of the sample was placed into the cultivation medium (MEM) with the addition of 1% trypsin and 1% antibiotic-antimycotic solution (Santa Cruz Biotechnology, Dallas, TX, USA). The material was maintained at cold temperatures for 16–24 h to enable trypsin diffusion. Primary cell lines were subsequently prepared.
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2

Cell Cycle Analysis of MNNG/HOS Cells

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MNNG/HOS cells were inoculated in 6-well plates with 1×106 /L cells per well and incubated for 24h, then different kinds of management of the respective plasmids was executed. 24h later, the cells were harvested and washed twice by PBS, digested by trypsin (Santa Cruz, USA) and dissociated into single cell suspension. After that the cells were fixed by 70% acetic acid ethanol for 1h at 4°C, re-suspended in 100 ul propidium iodide (PI; Sigma, USA) solution and incubated for 30 min in the dark. FACS Calibur (BD, USA) was used to analyze the cell cycle.
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3

Histological Analysis of Xenograft Metastasis

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Tissues were fixed in 10% formalin solution for 24 h and transferred to 70% ethanol. Tissues were paraffin embedded, sectioned and rehydrated. Hematoxylin/eosin and periodic Acid–Schiff staining were performed according to basic procedures. Sections were stained with anti-phospho-Erk1/2 (New England Biolabs, Ipswich, MA), anti-Ki67 (abcam, Cambridge, MA), anti-chromogranin A (abcam, Cambridge, MA), anti-cytokeratin 7 (Invitrogen, Rockford, IL), anti-cytokeratin 19 (Cell Signaling Technology, Danvers, MA) and with Trypsin, Bcl10, Mucin4 from Santa Cruz Biotechnology, Santa Cruz, CA. For each time point, histology of four sections separated by 200 µm from at least three individual animals was evaluated. Metastasis quantification: for each mouse, two lobes of the liver and one lung were sliced and embedded in paraffin. Gross and microscopic examination of H&E stained sections was used to identify the percentage of mice with at least one metastasis to the liver and lung.
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4

Cell Cycle Analysis by Flow Cytometry

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Cells belonging to each group were collected in the logarithmic growth phase and digested in 0.25% trypsin (Santa Cruz). Prepared cell suspensions were adjusted to 1×10 6 cells/mL and then centrifuged for 5 min at 1000 rpm at 4°C. Cells were washed twice in PBS and fixed in 5 mL of 70% ethanol overnight at 4°C. Subsequently, the cells were centrifuged the following day and resuspended in PBS. RNase (Sigma, St. Louis, MO, USA) was added to a final concentration of 50 μg/mL, and cells were placed in a 37°C water bath to allow the digest to proceed for 30 min. Propidium iodide (Sigma) was added to the cells at a final concentration of 100 μg/mL. Cells were stained in an ice bath in the dark for 30 min. Cells were then analyzed using a flow cytometer (BD, Franklin Lakes, USA) to detect changes in the cell cycle (BD CellQuest software).
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