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5 protocols using ab180606

1

Colocalization of β5i and RIG-I

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To explore the colocalisation of β5i and RIG-I, double-label immunostaining was performed. After blocking with 5% bovine serum albumin in PBST at room temperature for 1 hour, the samples were treated with mouse anti-RIG-I monoclonal antibody (1:50, sc-376845, Santa Cruz Biotechnology) and rabbit anti-β5i monoclonal antibody (1:2000, ab180606, Abcam) overnight at 4°C, followed by three washes with PBS (10 min each wash). Next, the samples were treated with Alexa Fluor 594-conjugated goat anti-mouse IgG (1:200, 8890, Cell Signaling Technology) and Alexa Fluor 488-conjugated goat anti-rabbit IgG (1:200, 4412, Cell Signaling Technology), which were used as the secondary antibodies, in a dark chamber for 1 hour, followed by three washes with PBST. After counterstaining with DAPI (Beyotime, Shanghai, China), the slides were mounted with coverslips. To clarify whether β5i is expressed in regenerative myocytes, we performed double-label immunostaining using rabbit anti-β5i monoclonal antibody (1:2000, ab180606, Abcam) and mouse anti-NCAM1 monoclonal antibody (1:500, ab6123, Abcam), following the same procedure mentioned above. In addition, double-label immunofluorescence staining using rabbit anti-β5i monoclonal antibody and mouse anti-MxA monoclonal antibody (1:100, sc-166412, Santa Cruz) was performed following the above procedure.
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2

Western Blot Analysis of Immune Signaling

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The total proteins were extracted and separated by 10% or 15% SDS-PAGE and were transferred to polyvinylidene difluoride membranes (Millipore, Bedford, Massachusetts, USA) using a semi-dry Gel Transfer Device (Bio-Rad, Hercules, California, USA). The membranes were blocked using 5% non-fat milk and probed with primary antibodies and HRP-conjugated secondary antibodies. Antigen-antibody complexes were visualised using a chemiluminescent ECL detection system and analysed using a ChemDoc XRS+image analyser. GAPDH or β-actin was used as an internal control. The antibodies used included anti-β5i (1:5000, ab180606, Abcam), anti-RIG-I (1:2000,3743, Cell Signaling Technology), anti-Phospho-NF-κB p65 (1:1000, 3033, Cell Signaling Technology), anti-Phospho-IRF3 (1:500, ab76493, Abcam), anti- IFNβ (1:500, ab275880, Abcam), anti- MxA (1:500, sc-166412, Santa Cruz), anti-MuRF1 (1:2000, ab172479, Abcam), anti-β-actin (1:5000, YM3028, Immunoway) and anti-GAPDH (1:10000, YM3029, Immunoway). The selective β5i inhibitor PR-957 was purchased from Selleck Chemicals (Houston, Texas, USA).
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3

Immunostaining of Muscle Proteins

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Frozen muscle sections were incubated with H2O2 (3%) for 15 min, followed by washing three times with phosphate buffer solution Tween-20 (PBST). The slides were blocked with goat serum at room temperature for 2 hours. Rabbit antibodies against human β5i (1:2000, ab180606, Abcam) and RIG-I (1:500, ab45428, Abcam) were used as the primary antibodies. A monoclonal rabbit IgG (1:2000, ab37415, Abcam) was used as isotype control for β5i (1:2000, ab37415, Abcam) and a polyclonal rabbit IgG (1:500, ab172730, Abcam) was used as isotype control for RIG-I. After washing with phosphate-buffered saline (PBS), the slides were incubated with HRP-conjugated secondary antibodies. Each incubation step was followed by three washes with PBST. Diaminobenzidine was used as the chromogen to visualise the proteins.
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4

Proteasomal Subunit Expression Analysis

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PBMCs (2 × 107 cells/sample) were lysed in radio-immunoprecipitation assay (RIPA) buffer (Bestbio, Shanghai, China). Immunoblots were performed using polyclonal rabbit anti-human/mouse LMP2 (ab242061, Abcam), LMP7 (ab180606, Abcam), LMP10 (ab183506, Abcam), β-actin (ab179467, Abcam), GAPDH (ab181602, Abcam), p-STAT1 (Cell Signaling), STAT1 (Cell Signaling), p-STAT3 (Cell Signaling), and STAT3 (Cell Signaling) antibodies. Semi-quantitative evaluation of protein levels was performed by comparing band intensity between the protein of interest and the housekeeping controls, GAPDH or β-actin. The level of phosphorylated proteins was measured based on the ratio of phosphorylated protein to total protein.
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5

Proteasome Subunits Expression Analysis

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Protein extracts (25 μg per muscle) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) 12% and transferred to a polyvinylidene fluoride (PVDF) membrane, in which the remaining binding sites were blocked with 5% skim milk in tris buffer saline (TBS) pH 7.4. Then, membranes were incubated overnight with the following antibodies: anti-β5 (1:2000, Ab3330, Abcam, Cambridge, England); anti-β1 (1:1000, sc-100455, Santa Cruz Biotechnology, Dallas, TX, USA); anti-β5i (1:5000, Ab180606, Abcam, Cambridge, England); anti-β1i (1:300, sc-373689, Santa Cruz Biotechnology, Dallas, TX, USA); and anti-GAPDH (1:1000, sc-25778, Santa Cruz Biotechnology, Dallas, TX, USA). Detection was accomplished with anti-IgG antibodies coupled with horseradish peroxidase antibodies (1:1000; Dako, Denmark) and visualized by enhanced electrochemiluminescence Pierce ECL Western Blotting Substrate (Thermo Scientific, USA). Quantification on Western blot image was performed with the integrated density function of ImageJ (Bethesda, MD, USA) [21] . Proteasome subunits expression was normalized with CO animals, considered as 100% expression.
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