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38 protocols using dextrans

1

Characterization of Yingshan Cloud Mist Tea

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Yingshan Cloud Mist Tea was purchased from Yingshan County, Caotangchun Tea Co. Ltd. (Hubei Province, China). Dextrans of different molecular weight (T-1300, T-6000, T-12000, T-22000, T-50000, T-110000, T-400000, and T-800000) and the standard monosaccharides samples (rhamnose, fucose, arabinose, xylose, mannose, glucose, and galactose) used in this study were purchased from Sigma Chemical Co. (MO, USA). 1,1-diphenyl-2-picrylhydrazyl (DPPH), the ascorbic acid, and trichloroacetic acid solution were purchased from Aladdin Biotechnology Co. Ltd. (Shanghai, China). The commercial assay kits for GSH-PX, SOD, MDA, and T-AOC were purchased from Nanjing Jiancheng Bioengineering Research Institute (Nanjing, Jiangsu, China). All other chemicals and reagents were of analytical grade in this study.
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2

Glycolysis Pathway Analysis Protocol

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The organic solvents, inorganic salts, and acids used in the study were manufactured by Dia-m (Moscow, Russia). The sorbent for chromatography Macro-Prep DEAE was purchased from Bio Rad Laboratories, Inc. (Hercules, CA, USA). The phosphate-buffered saline (PBS), L-glutamine, penicillin/streptomycin solution (10,000 U/mL, 10 µg/mL), Minimum Essential Medium Eagle (MEM), and reference standards (mannose, rhamnose, glucose, galactose, xylose, and dextrans) were purchased from the Sigma-Aldrich company (St. Louis, MO, USA). The MTS reagent 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide was purchased from Promega (Madison, WI, USA). The trypsin, fetal bovine serum (FBS), 2-deoxy-D-glucose (2-DG), and the protein marker PageRulerTM Plus Prestained Protein Ladder were purchased from Thermo Fisher Scientific (Waltham, MA, USA).
The cell lysis buffer (10×), glycolysis antibody sampler kit #8337, antibodies against Glut 1, and horseradish peroxidase (HRP) conjugated secondary antibody from rabbit and mouse were purchased from Cell Signaling Technology (Danvers, MA, USA), and β-actin was purchased from the Sigma-Aldrich company (St. Louis, MO, USA).
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3

Fragmentation and Purification of Vi Capsular Polysaccharide

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Vi, freeze dried as the sodium salt, was solubilized in water and H2O2 was added to give a final concentration of 2.5 mg/mL Vi and 5% (wt/v) H2O2 in water. The mixture was heated at 80±0.5°C for 2h. The mixture was then injected into a Hiscreen Capto Q [GE Healthcare] column (4.7 mL of resin loading up to 100 mg of fragmented Vi mixture) equilibrated with buffer A and populations of different average size were separated using a gradient step method. NaH2PO4 20 mM pH 7.2 and NaH2PO4 20 mM NaCl 1M pH 7.2 were used as buffer A and B respectively. Pools at average size Vi of 8.6 and 43 kDa were eluted at 25 and 37% of buffer B respectively. Each pool was desalted on a Sephadex G-25 column [GE Healthcare] equilibrated with water. The average size of the fragmented Vi pools was determined by HPLC-SEC equipped with a TSK gel 3000 PWXL column and a TSK gel PWXL guard column (Tosoh Bioscience). Dextrans (5, 25, 50, 80, 150 kDa) were used as standards (Sigma Aldrich). The mobile phase was 0.1 M NaCl, 0.1 M NaH2PO4, 5% CH3CN, pH 7.2, at the flow rate of 0.5 mL/min (isocratic method for 30 min). HPAEC-PAD was used to measure Vi content [10 (link), 21 (link)]. 1H NMR was used to verify Vi identity and confirm O-acetylation levels were >60% [10 (link), 21 (link)].
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4

Size-Exclusion Chromatography of WSFs

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The WSFs (3 mg/mL) from different ripening points were analyzed by high-performance size-exclusion chromatography coupled with a refractive index detector (HPSEC-RID) using a 1250 Infinity system (Agilent, Santa Clara, CA, USA). The system was equipped with four PL aquagel-OH columns (60, 50, 40 and 30; 429 300 × 7.5 mm) connected in series. The eluent used was 0.2 M NaNO3/0.02% NaN3 (0.6 mL/min). The RID temperature was set at 30 °C20 (link). Average molecular weight (Mw) was calculated using a standard curve of dextrans (Mw 5–1,800 kDa; Sigma-Aldrich (St. Louis, MO, USA)). The void volume (Vo) was the elution time of the heavier molecule (blue dextran; ~1,800 kDa), and the included volume (Vi) was the elution time of glucose.
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5

Polysaccharide Molecular Weight Analysis

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The molecular weight analysis of the polysaccharides was conducted according to the method of Yang [7 (link)]. The standards used to calibrate the column were various dextrans with different molecular weights (50, 150, and 670 kDa), which were obtained from Sigma-Aldrich (Sigma-Aldrich, St. Louis, MO, USA).
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6

Determining CLSP-2 Molecular Weight

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The relative molecular weight of CLSP-2 was determined by high performance gel permeation chromatography (HPGPC). An analytical column of TSK-G5000PWXL (7.8 mm × 300 mm) equipped with a refractive index detector (Waters 2414, USA) was used. The mobile phase was 0.1 M ammonium acetate at a flow rate of 0.6 mL/min. Dextrans (Sigma, USA) with molecular weights of 5, 12, 25, 50, 150, 410, and 670 kDa were used as standard polysaccharides.
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7

Anti-inflammatory Potential of Nervilia fordii

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Stems and leaves of Nervilia fordii (900 g) were purchased from Yixin Pharmaceutical Group Ltd. Co. of Guangxi, and were authenticated by TCM-Pharmacist Jia-fu Wei from Guangxi Zhuang Autonomous Region Food and Drug Administration. A voucher specimen was coded as NF-02, and deposited in the laboratory of natural products of the School of Pharmaceutical Science, Guangxi Medical University.
The murine RAW264.7 macrophage cell line was obtained from Cell Resource Center, IBMS, CAMS/PUMC (Beijing, China). DMEM was purchased from Hyclone Laboratories Inc. (Logan, USA). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and Griess reagent were purchased from Beyotime Biotechnology Research Institute (Shanghai, China). Lipopolysaccharide (LPS; Escherichia coli 055: B5 endotoxin) and Dextrans were ordered from Sigma-Aldrich (St. Louis, MO, USA). Enzyme linked immunosorbent assay (ELISA) kits for cytokines were purchased from R&D systems (Minneapolis, MN, USA). The ultrapure water was obtained from a Milli-Q® water purification system of Millipore (Bedford, MA). All other chemicals and reagents used in this paper were analytical grade purchased in China.
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8

Dextran-based Hydrogel Synthesis

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Dextrans (from Leuconostoc spp., Mr = 6–500 kDa), dimethyl sulfoxide (DMSO, anhydrous, ≥99.9%), glycidyl methacrylate (GMA, 97%, stabilized by 0.005% hydroquinone monomethylether), 4–(N,N-dimethylamino)pyridine (DMAP) and cellulose dialysis membrane tubes (MWCO 14 kDa) were purchased from Sigma Aldrich (Poznan, Poland). Hydrochloric acid (HCl, 36–38%) and potassium thiocyanate (KSCN) were acquired from Chempur (Piekary Slaskie Poland). Tert-butanol Emplura (tert-BuOH, 99%) was purchased from Merck KGaH Group (Darmstadt, Germany). Dialysis membranes from regenerated cellulose with MWCO 3.5 kDa and 13 kDa were delivered by SERVA Electrophoresis GmbH (Heidelberg, Germany). Gases of high purity (99.999%): nitrous oxide (N2O) and argon (Ar), were purchased from Linde Group and Air Products, respectively. All reagents, with the exception of Dex, were used as received. Ultra-purified water (>18 MΩ·cm) was obtained using MicroPure system (TKA, Thermo Scientific, Waltham, MA, USA).
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9

Molecular Weight Analysis of Polysaccharides

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The molecular weight analysis of the polysaccharides was conducted according to the method of Yang [19 (link)]. The standards used to calibrate the column were various dextrans with different molecular weights (1, 5, 12, 50, 150, and 670 kDa), which were obtained from Sigma-Aldrich (Sigma-Aldrich, St. Louis, MO, USA)
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10

Antioxidant Capacity Evaluation of Citrus Pectin and Dextrans

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Citrus pectin and dextrans were purchased from Sigma-Aldrich (St. Louis, MO, USA). Hydrogen peroxide, ferrous chloride tetrahydrate, HPLC-grade methyl alcohol and deuterium oxide were obtained from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,20-Azobis(2-methylpropionamidine) dihydrochloride (AAPH), 6-hydroxy-2,5,7,8-tetramethyl-chroman-2-carboxylic acid (Trolox) and 2,2′- azino-bis-(3-ethylbenzo-thiazoline-6-sulfonic acid) diammonium salt (ABTS) were acquired from Aladdin Chemical Reagent Co., Ltd. (Shanghai, China).
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