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5 protocols using cxp software v2

1

Annexin-V-PE/7-AAD Apoptosis Assay

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The apoptotic cell population were measured using the Annexin-V-PE (phycoerythrin)/7-AAD (7-amino-actinimycin) apoptosis detection kit (BD Biosciences, San Jose, CA). MB cells were treated with DMSO, TA (10 μg/mL), VCR (DAOY – 2 ng/mL; D283 – 1 ng/mL) or combination. The treated cells were then collected at 24 h and 48 h timepoints to obtain single cell suspension and briefly washed with PBS. These cells were resuspended in 1X binding buffer and further incubated in the dark with Annexin V-PE antibody and 7-AAD for 20 minutes at room temperature. Cells were analyzed using the Beckman Coulter’s Cytomics FC500 flow cytometer (Brea, CA), followed by fluorescence compensation using CXP software V2.2 (Beckman Coulter, Inc.) and data analysis using FlowJo software V8.0 (Tree Star, Inc., Ashland, OR). The processed data was then represented as a percentage of (early or late) apoptotic or non-apoptotic cells in the analyzed cell population. The assay was replicated four times and fold increase in apoptotic cell population with respect to the control was calculated for each set. The quadruplet data was shown as mean ± SEM.
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2

Cell Cycle Analysis Using Flow Cytometry

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After removed the cells with 0.25% trypsin (GIBCO), the cell suspension was rinsed by pre-cooled PBS and then gently re-suspended with 70% ethanol at 4 °C for 12 h. The fixed cells were rinsed with PBS and incubated with propidium iodide containing RNase A at 37 °C for 30 min (Beyotime, C1052). The single cells were screened before flow analysis (Cytomic FC 500 MCL, Beckman Coulter, USA). Data was obtained using CXP software v2.2 (Beckman Coulter, USA), and set the parameter to FL3-620nm BP. 10,000 events were collected per sample manually determined the percentage of G1, G2 and S phases. Data in different groups were imported in Excel software (Microsoft) and generated the graph of relative cell population.
The S phase cells were detected by EdU Cell Proliferation Kit with Alexa Fluor 488 (Beyotime, C0071S). The cells on coverslip were treated with pre-warmed EdU (20 µM) for 2 h, and then fixed by 4 % paraformaldehyde in PBS for 15 min and permeabilized with 0.25% Triton X-100 in PBS for 10 min. Each process followed by PBS washing for 3 times and the cells were incubated in click additive solution (Click Reaction Buffer, CuSO4 and Azide 488) at room temperature for 30 min. The followed steps of staining the antibodies and nucleus were same as the immunofluorescence assay.
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3

Flow Cytometry Analysis of Dendritic Cells

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Flow cytometry samples were collected using a Cytomics FC500 flow cytometer (Beckman Coulter, Brea, CA, USA) and data were analyzed using CXP software v2.2 (Beckman Coulter, Indianapolis, IN, USA). The following antibodies were purchased from BioLegend (San Diego, CA, USA): PE anti mouse/human CD207, PerCP/Cy5.5 anti-human CD1a, PE mouse IgG1, and PerCP/Cy5.5 mouse IgG1. For intracellular staining, cells were prepared according to the Affymetrix eBioscience protocol. Briefly, single cell suspensions were treated with IC Fixation Buffer, 1X Permeabilization Buffer, and the appropriate antibody, prior to being analyzed via flow cytometry.
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4

Characterization of Dental Pulp Stem Cells

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The isolated stem cells were characterized by analyzing the cell surface antigen expression. Adherent cells from dental pulp at P3 were detached using 0.05% trypsin and adjusted to 1 × 10 5 cells/mL. Then, 1 × 10 5 cells were incubated with 10 μL of the monoclonal antibodies against CD29, CD34, CD45, CD90, and CD105 (Beckman Coulter, Inc., Miami, USA) for 30 min at 4°C in the dark. Isotopes served as a negative control. The cell analysis was performed using the Cytomics TM FC 500 flow cytometer (Beckman Coulter, Inc.) and the data was analyzed using the CXP software, v. 2.2 (Beckman Coulter, Inc.).
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5

Flow Cytometry Cell Isolation and Analysis

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Cultured cells were detached and incubated with fluorescently labeled antibodies (1 × 106 cells per milliliter, >200 μl/test) at room temperature in the dark, resuspended and washed in PBS, and then pelleted by centrifugation (300g for 10 minutes). Isotype-matched IgGs (BD Biosciences, Franklin Lakes, NJ, http://www.bdbiosciences.com) were used as controls, and at least 10,000 live events were analyzed on an FC 500 MCL/MPL Flow Cytometer. Data were evaluated with the aid of CXP Software v2.2 (Beckman Coulter, Sharon Hill, NJ, http://www.beckman.com) (information on antibodies is available in the supplemental online data). For cell cycle test, alcohol-fixed cells were stained with propidium iodide (Life Technologies, Thermo Fisher Scientific Life Sciences). For cell sorting, at least 5 × 106 cells were collected and incubated with fluorescein isothiocyanate-conjugated mouse antihuman CD146 antibody (EMD Millipore, Billerica, MA, http://www.emdmillipore.com/) for 30 minutes at room temperature. Both CD146(+) and CD146(−) live cell subpopulations were sorted, counted on a Becton Dickinson fluorescence activated cell sorting (FACS) Aria II Flow Cytometer (McGowan Institute, Pittsburgh, PA, http://www.mirm.pitt.edu/), and collected for further study.
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