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Velos ltq system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Velos LTQ System is a mass spectrometer designed for high-performance liquid chromatography (HPLC) and tandem mass spectrometry (MS/MS) applications. It features a linear ion trap mass analyzer and is capable of performing full-scan and data-dependent MS/MS analyses.

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6 protocols using velos ltq system

1

Leaf Metabolite Extraction and Analysis

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One gram of frozen leaf material per sample was ground with liquid nitrogen. For extraction, 5 ml 80% (v:v) methanol was added. The samples were treated with a Miccra D-9 homogenizer (MICCRA GmbH, Heitersheim, Germany) for 1 min and then placed into a Sonorex RK510 ultrasonic bath (BANDELIN electronic GmbH & Co. KG, Berlin, Germany) for 15 s. Subsequently, 2 ml of the suspension were centrifuged at 10,000×g for 5 min. 350 μl of the supernatant were added to 700 ml ultrapure water, mixed, and centrifuged again at 12,000 rpm for 5 min. The supernatant was then filtered with a Chromafil disposable filter O-20/15 MS (MACHEREY-NAGEL GmbH & Co. KG, Düren, Germany). Analytical UHPLC–MS analysis was performed on a Velos LTQ System (Thermo Fisher Scientific, Waltham, United States). Separation was achieved on a Synergi Polar 4 μm 3 × 150 mm column. The mobile phase consisted of 5% acetonitrile and 0.05% formic acid (solvent A), and acetonitrile LCMS grade (solvent B). The gradient used was: 95% A/5% B, 0–1 min; 10% A/90% B, 11–13 min; 95% A/5% B, 13.1 min; 95% A/5% B, 16 min. The flow rate was 0.5 ml min−1, and the injection volume was 1 μl. The SA standard was purchased from Merck KGaA (Darmstadt, Germany). The standard was prepared in concentrations of 0.1, 0.5, 1.0 mg L−1 with water/acetonitrile (70:30 v:v). Phytohormone content in μg g−1 was calculated using the formula:
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2

Quantifying Antifungal Benzoate via UHPLC-MS

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For determination of the antifungal compound benzoate 50 μl aliquots of sorption filter extract were mixed with 50 μl of H2O followed by UHPLC-MS analysis on a Velos LTQSystem (Thermo Fisher Scientific, Waltham, MA, United States). Identification and quantitative analysis were conducted on an ACCLAIMTMC30 column, 150 mm × 3 mm (ThermoScientific, Waltham, MA, United States) with gradient elution (solvent A): H2O: acetonitrile (95:5) and (solvent B): acetonitrile and an external standard.
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3

Amino Acid Analysis by HPLC-MS

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A total of 20 μl aliquots from 0.6 ml sorption filter extract were mixed with 15 μl of derivatization agent (ACCQFLUOR REAG, Waters, Milford, MA, United States) and 65 μl of borate buffer, incubated 10 min at 55°C, followed by addition of 400 μl acetonitrile: H2O (1:4) with modifications of the method of Cohen and Michaud (1993) (link). Determination of amino acids (glutamic acid, asparagine, serine, glutamine, glycine, threonine, histidine, alanine, proline, cysteine, thyrosine, methionine, isoleucine, leucine, and phenylalanine) was performed by HPLC-MS, using a Velos LTQSystem (Thermo Fisher Scientific, Waltham, MA, United States) equipped with a ACCUTAGTM column, 4 μm particle size, 150 mm × 3.9 mm (Waters, Milford, MA, United States) and additional comparison with external standards. Gradient elution was performed with (A) ammonium formate: methanol: H2O (40:9:60) and (B) acetonitrile.
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4

Metabolite Profiling of Arabidopsis Roots

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Frozen Arabidopsis roots were ground to a fine powder with liquid nitrogen and 1-g plant material was treated with 80% (v/v) methanol. Supernatants were collected after centrifugation and cleaned by membrane filtration (Chromafil O-20/15 MS). Samples were then analyzed by ultra-high performance liquid chromatography-mass spectrometry (UHPLC-MS) on a Velos LTQ System (Thermo Fisher Scientific, Waltham, MA, USA) as described in more detail by Moradtalab and co-workers (Moradtalab et al., 2018 (link)).
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5

Quantification of Phytohormones in Maize

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Frozen maize tissue samples (shoot, roots) of 1 g of were ground to a fine powder with liquid nitrogen and extracted twice with 2.5 ml of 80% methanol in falcon tubes. Thereafter, the samples were further homogenized by ultrasonication (Micra D-9 homogenizer, Art, Müllheim Germany) for 1 min and 15 s at 10,000 rpm. Two milliliters of the methanol extracts were transferred to microtubes and centrifuged at 5,645 × g for 5 min. Thereafter, 350 μl of the supernatant was mixed with 700 μl ultra-pure water and centrifuged at 5,645 × g for 5 min. The supernatant was cleaned by membrane filtration (Chromafil® O-20/15 MS) and transferred to HPLC vials. UHPLC-MS analysis was carried out on a Velos LTQ System (Thermo Fisher Scientific, Waltham, Massachusetts, USA) fitted with a Synergi Polar column, 4 μ, 150 * 3.0 mm, (Phenomenex, Torrance, California, USA). The injection volume was 3 μL and the flow rate was adjusted to 0.5 ml min−1 for gradient elution with mobile phase (A): water and 5% acetonitrile; mobile phase (B): acetonitrile and a gradient profile of: 0–1 min, 95% A, 5% B, 11–13 min, 10% A, 90% B, 13.1 min, 95% A, 5% B, 16 min 95% A, 5% B). All standards were purchased from Sigma Aldrich, (Sigma Aldrich, St. Louis, Missouri, USA) including (+/–)-jasmonic acid; 3-indoleacetic-acid, gibberellic acid, (+/–)-abscisic acid; trans-zeatin; salicylic acid.
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6

Metabolite Extraction from Arabidopsis Roots

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Frozen Arabidopsis roots were ground to a fine powder with liquid nitrogen and 1 g plant material was treated with 80 % methanol. Supernatants were collected after centrifugation and cleaned by membrane filtration (Chromafil® O-20/15 MS). Samples were then analysed by UHPLC-MS on a Velos LTQ System (Thermo Fisher Scientific, Waltham) as described in more detail by Moradtalab and co-workers (Moradtalab et al. 2018 ).
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