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3 protocols using dacomitinib

1

Cytotoxicity Assays Investigating ERBB4 Inhibitors

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Ba/F3 cells (20,000 cells/well) expressing ERBB4 variants were plated on 96-well plates in RPMI1640 medium containing 10 ng/mL NRG-1. Vector control cells were plated in RPMI1640 medium containing 5% WEHI conditioned medium. The cells were incubated in the presence or absence of 0.0005–10 µmol/L erlotinib (Santa Cruz Biotechnology), afatinib (Boehringer Ingelheim), neratinib (SantaCruz Biotechnology), dacomitinib (Cayman Chemicals), poziotinib (Selleck Chemicals), ibrutinib (Selleck Chemicals), or lapatinib (Santa Cruz Biotechnology), for 72 hours before measuring the viability of cells with MTT assay (described above). Sigmoidal dose–response curves were fitted using asymmetric five-parameter non-linear regression in GraphPad Prism 9 and are graphically displayed with GraphPad Prism 9. The IC50 values are calculated with the help of the R package “drc” (34 (link)) by using quadruplicate measurements from the MTT assay for the indicated concentrations from 3–5 individual experiments and fitting four-parametric log-logistic models (LL.4, LL2.4; R). The unpaired t test (Welch two-sample t test) was used to compare IC50 values.
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2

Inhibition of ErbB Kinase Activity in Embryos

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To block ErbB kinase activity in the embryos, 10 µM of tyrosine kinase inhibitors AG 1478 (Calbiochem), erlotinib, gefitinib, lapatinib, afatinib, neratinib, canertinib (all from Santa-Cruz Biotechnologies), osimertinib, and dacomitinib (both from Cayman Chemical), diluted in DMSO, or DMSO alone was applied in E3 medium at 8 hpf, except as indicated for experimentation shown in Figure 4D. The final concentration of DMSO was 0.1% of the culture medium.
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3

Isotope-Labeled Metabolite Tracing Protocol

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13C5-labeled Gln (catalog no. CLM-1822-H), alpha-15N Gln (catalog no. NLM-1016-PK), 13C6-labeled glucose (catalog no. CLM-1396-PK), 15N-labeled alanine (catalog no. NLM-454) and 13Cx,15Nx-labeled amino acid standard mix (catalog no. MSK-A2) were acquired from Cambridge Isotope Laboratories. N-acetyl-l-cysteine (catalog no. A7250) dimethylsulfoxide (DMSO), methoxyamine hydrochloride and MTBSTFA + 1% t-BDMSC and DON (catalog no. D2141) were obtained from Sigma-Aldrich. Trametinib (catalog no. 16292) and dacomitinib (pan-RTK inhibitor, catalog no.9001879) were obtained from Cayman Chemical.
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