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XBP-1s is a laboratory product designed to detect and analyze the spliced form of the X-box binding protein-1 (XBP-1) transcription factor. XBP-1s is a key regulator of the unfolded protein response (UPR) and plays a role in cellular homeostasis and stress response pathways. This product can be used in various research applications involving the study of ER stress, the UPR, and related cellular processes.

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7 protocols using xbp 1s

1

Western Blot Analysis of EMT Markers

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PRO-PREPTM protein extraction solution (iNtRON Biotechnology, Seongnam, Korea) was used to lyse cells or tissues. Proteins were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinyl difluoride membranes (Millipore Inc., Billerica, MA). Membranes were blocked with 5% skim milk and incubated with the following antibodies: E-cadherin, vimentin, α-SMA, fibronectin, GRP78, XBP-1s, phosphorylated c-Src, and β-actin (Santa Cruz). The blots were detected after incubation with horseradish peroxidase-conjugated secondary antibodies by an enhanced chemiluminescence detection system (Pierce, Rockford, IL).
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2

Antibodies for IRE-1, PARP, XBP-1s, p97 Detection

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Antibodies
against IRE-1 (Cell
Signaling), PARP (Cell Signaling), XBP-1s (Santa Cruz), p97 (Fitzgerald),
and actin (Sigma), were obtained commercially.
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3

Western Blot Analysis of Liver Proteins

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Proteins from liver homogenates (30 μg) or ER fractions (10 μg) were separated by SDS-PAGE and transferred onto a polyvinylidene difluoride membrane. Membranes were incubated with a primary antibody overnight at 4 °C. Primary antibodies obtained from Santa Cruz Biotechnology (Heidelberg, Germany) were iPla2β (cat# sc-14463), Xbp-1s (cat# sc-8015), Chop (cat# sc-7351), Srsf3 (serine/arginine-rich splicing factor 3) (cat# sc-13510), Fxr (cat# sc-25309), and calnexin (cat# sc-70481). Other primary antibodies were p-Ire1α (cat# NB100-2323, Novus Biologicals Europe, Abingdon, UK), Scd-1 (cat# ab19862, Abcam, Berlin, Germany), p-eIF2α (cat# 1090-1, Epitomics, Burlingame, CA, USA), Bip (cat# 3177, Cell Signaling, Frankfurt, Germany), p-Perk (cat# 3179, Cell Signaling), Gapdh (cat# 2118, Cell Signaling), and β-actin (cat# A1978, Sigma, Taufkirchen, Germany). After incubation with an HRP-conjugated secondary antibody, blots were developed by using a Luminata Forte ECL reagent (Millipore, Darmstadt, Germany).
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4

Cell Line Characterization and Immunoblot Analysis

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The cell lines MDA-MB-468 and BT474 were purchased from American Type Culture Collection (ATCC) (Manassas, Va). Unless otherwise indicated, cancer cell lines were grown in Dulbecco’s modified Eagle’s medium (GE Healthcare Life Sciences Logan, UT) supplemented with 10% fetal bovine serum (10% FBS-DMEM) in a humidified 37 °C incubator with 5% CO2. Cell lysates were prepared as described previously.[41 (link)] Immunoblot analysis was performed employing the following antibodies purchased from Cell Signaling Technology (Beverly, MA) [Akt, #4691; P-Akt[T308], #13038; P-Akt[S473], #9271; ATF4, #11815; EGFR, #4267; HER2, #2165; HER3, #4754; IRE1, #3294; XBP1s, #12782; PARP, #9532; PERK, #5683; GRP78, #3177; CHOP, #2895; DR5, #8074; DR4, #42533; PDK1, #5662; Cleaved Caspase 8, #9496; Cleaved Caspase 3, #9664; P-ERK, #9101] and Santa Cruz Biotechnology (Santa Cruz, CA) [IGF1R, sc-713; ERK, sc-93; Actin, sc1616-R]. P-IRE1[Ser724] (nb100-2323ss) antibody was from Novus Biologicals. Immunoblots are shown in the Supporting Information.
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5

Immunoblotting of Cellular Stress Proteins

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Protein extract (50 µg) of each sample was separated by SDS–polyacrylamide gel electrophoresis (4 to 15%) and electroblotted onto 0.2-µm PVDF (polyvinylidene difluoride) membrane. The following primary antibodies were used for incubations: ATF4 (sc-200; rabbit; 1:500), calreticulin (sc-11398; rabbit; 1:500), XBP-1s (sc-32155; goat; 1:500), PDI (protein disulfide isomerase) (sc-20132; rabbit; 1:500), GAPDH (glyceraldehyde phosphate dehydrogenase) (sc-25778; rabbit; 1:2,000), GLUT4 (sc-53566; mouse; 1:1,000), all from Santa Cruz; GRP78 (BD610979, BD Biosciences; mouse; 1:500); calnexin (#2433, Cell Signaling; rabbit; 1:500); and anti-dinitrophenyl (90451, OxyBlot, Chemicon; 1:150).
The membranes were then incubated with horseradish peroxidase–conjugated secondary antibodies. Signals were developed by Luminol Reagents (sc-2048, Santa Cruz Biotechnology), and x-ray images were analyzed by ImageJ software. GAPDH signals were used as loading control.
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6

Antibody Characterization Protocol

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Antibodies against IRE-1 (Cell Signaling), PARP (Cell Signaling), XBP-1s (Santa Cruz), p97 (Fitzgerald), and actin (Sigma), were obtained commercially.
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7

Western Blot Analysis of Cellular Proteins

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Cells or tissue were lysed with LB (125mM Tris-HCl pH 6.7, NaCl 150 mM, NP40 0.5%, 10% Glycerol). Proteins (20 μg) were denatured and deposited directly (75 μg of proteins) onto a SDS-PAGE gel. Western blotting was performed using antibodies raised against p53 (rabbit anti-p53, FL-393, Santa Cruz, CA), XBP1s (Santa Cruz, CA), EZH2 (Cell Signaling), H3 (Cell Signaling), H3K9 (Abcam) and HDAC4 (Biolegend). Secondary antibodies (anti-rabbit, anti-mouse: Sigma, MA) were incubated at 1:1000. Loading was controlled with actin (rabbit anti- β-actin, Sigma, 1:4000) [46 (link)].
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