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4 protocols using ab1778

1

Characterization of Transcription Factors

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Antibodies to Calbindin (Millipore ab1778; IHC), Mef2a (Santa Cruz sc-313; ChIP/IP/IB), Mef2c (Protein-Tech 18290-1-AP; IB), 14-3-3 (Santa Cruz sc-1675; IB), Cre (Millipore 69050-3; IB), histone H3K27ac (Abcam ab4729; ChIP), cleaved caspase 3 (Cell Signaling Technology 9661S; IHC), GFP (Abcam ab13970; IHC) were purchased. Antibodies to Mef2a (IB) and Mef2d (ChIP/IP/IB) have been described (Flavell et al., 2008 (link); Andzelm et al., 2015 (link)).
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2

Comprehensive Antibody Characterization for CLIP, IF, and WB

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Primary antibodies used for CLIP, immunofluorescent staining (IF), and western blots (WB) were: mouse anti-GFP ((Heiman et al., 2014 (link)), clones 19F7 and 19C8, cTag-CLIP), rat anti-GFP (nacalai tesque, GF090R, IF: 1/1,000), rabbit anti-Cux1 (Santa Cruz, sc-13024, IF: 1/200), mouse anti-GFP (Santa Cruz, sc-9996, WB: 1/1,1000), rabbit anti-mRFP/tdTomato (ROCKLAND, 600-401-379, IF: 1/2,000), rabbit anti-NeuN/RBFOX3 (Millipore, ABN78, IF: 1/1,000), guinea pig anti-NeuN/RBFOX3 (Millipore, ABN90P, IF: 1/1,000), goat anti-NOVA2 (Santa Cruz, sc-10546, IF; 1/500, WB; 1/2,000, CLIP), rabbit anti-NOVA1 [EPR13847] (abcam, ab183024, IF: 1/1,1000), human anti-pan NOVA (anti-NOVA paraneoplastic human serum, WB: 1/5,000), rabbit anti-PTBP2 (Polydorides et al., 2000 (link), IF:1/5,000, CLIP), guinea pig anti-vGlut1 (Synaptic System, 135 304, IF:1/2,000), rabbit anti-vGlut2 (Synaptic System, 135 403, IF: 1/2,000), mouse anti-VGAT (Synaptic System, 131 011, IF:1/1,000), rabbit anti-Calbindin D28 (Millipore, AB1778, IF: 1/1,000), goat anti-Calbindin D28 (Santa Cruz, sc-7691, IF: 1/500), rabbit anti-ITPR1/InsP3R, type1 (Millipore, ABS55, IF:1/2,000), mouse anti-GAPDH (Santa Cruz, sc-32233, WB: 1/1,000).
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3

Characterization of Transcription Factors

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Antibodies to Calbindin (Millipore ab1778; IHC), Mef2a (Santa Cruz sc-313; ChIP/IP/IB), Mef2c (Protein-Tech 18290-1-AP; IB), 14-3-3 (Santa Cruz sc-1675; IB), Cre (Millipore 69050-3; IB), histone H3K27ac (Abcam ab4729; ChIP), cleaved caspase 3 (Cell Signaling Technology 9661S; IHC), GFP (Abcam ab13970; IHC) were purchased. Antibodies to Mef2a (IB) and Mef2d (ChIP/IP/IB) have been described (Flavell et al., 2008 (link); Andzelm et al., 2015 (link)).
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4

Cerebellum tissue preparation and immunohistochemistry

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Cerebella of mice were formalin-fixed and paraffin-embedded (8 μm sections; see above). Alternatively, brains were fixed with 4% PFA in PBS for 2.5 hours on ice, followed by cryoprotection with 30% sucrose in PBS over night. Fixed tissues were embedded in O.C.T™ Compound (Sakura), frozen on dry ice and cryopreserved at -80°C for cryosections (12μm thickness). For staining with anti-PCNA antibody, sections were subjected to heat antigen retrieval with 10 mM citrate buffer for 30 minutes. After blocking with 10% normal donkey serum in PBS-T (0,1% Triton X-100 in PBS) for 30 minutes at room temperature, sections were incubated with primary antibody over night at 4°C. Incubation with secondary antibody was performed for 30 minutes at room temperature. Subsequently, sections were mounted using the ProLong Gold antifade reagent (Lifetechnologies). The antibodies used for IHC were anti-Pax6 (1:1000, Covance, PRB-278P), anti-PCNA (1:1000, Merck Millipore, NA03), anti-GFP (1:1000, Abcam, ab13970), anti-GFP (1:1000, Cell Signaling, 2555), anti-Pax2 (1:1000, Invitrogen, 71-6000), anti-Calbindin (1:1000, Millipore, AB1778), anti-Sox2 (1:500, Santa Cruz, sc-17320), anti-p27 (1:1000, BD Biosciences, 610242) and anti-Atoh1 (1:1000, Muguruma et al., 201042 (link)).
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