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Lipopolysaccharide lps

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Lipopolysaccharide (LPS) is a complex molecule found in the outer membrane of Gram-negative bacteria. It is a key structural component of the bacterial cell wall and plays a crucial role in the immune response. LPS consists of a lipid portion known as lipid A and a polysaccharide component. The core function of LPS is to provide structural integrity and serve as a barrier for the bacterial cell.

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39 protocols using lipopolysaccharide lps

1

Murine Macrophage Activation Assay

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Cell culture medium (DMEM and Schneider), antibiotic solution (penicillin and streptomycin), 3-(4,5-100 dimethylthiazol-2-yl) 2,5-bromide diphenyltetrazolium (MTT), zymosan particles, Griess reagent (1% sulfanilamide in 10% (v/v) H3PO4 in Milli-Q water), and neutral red, were purchased from Merck Company (São Paulo, SP, Brazil). Fetal bovine serum (FBS) was obtained from ThermoFisher (São Paulo, SP, Brazil). Interferon gamma (IFN-γ) and lipopolysaccharide (LPS) were obtained from Life Technologies Corporation (Frederick MD, USA). (E)-β-ocimene (C10H16; ≥90% purity; its structure is shown in Figure 6; simply called β-ocimene in this work) was obtained from LGC Standards (London, UK). The murine standard TMB ELISA Development Kit was obtained from eBioscience (São Paulo, SP, Brazil). Sodium dodecyl sulfate (SDS) and dimethyl sulfoxide (99% DMSO) were obtained from Mallinckrodt Chemicals (St. Louis, MO, USA). Sodium nitrite (NaNO2) was obtained from Vertec Fine Chemistry (Rio de Janeiro, RJ, Brazil).
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2

Immune Cell Isolation and Cytokine Analysis

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Single-cell splenocyte suspensions were prepared from 8–12-week-old NOD mice. CD4+ T cells were purified using the BD IMag CD4 T Lymphocyte Enrichment Set - DM (BD Biosciences), and resting B cells were purified using BD IMag B Lymphocyte Enrichment Set - DM (BD Biosciences), per manufacturer’s instructions. CD4+ T cells (2.5 × 105/well) were seeded in 96-well plates coated with αCD3 (1 μg/mL) (BioLegend, San Diego, CA) with media containing αCD28 (0.5 μg/mL) (BioLegend). Cytokine concentrations (48 and 72 h) in the supernatant were measured by ELISA (interleukin [IL]-2 and interferon-γ [IFN-γ] [BD Biosciences] and TNF-α [R&D Systems, Minneapolis, MN]) as previously described (26 (link)). B cells (2.5 × 105/well) were seeded in 96-well plates for 72 h with media containing 1 μg/mL lipopolysaccharide (LPS) (Life Technologies) and 2 ng/mL IL-4 (R&D Systems) as previously described (27 ). IgG and IgM antibody production were measured in the supernatant from the B cells by ELISA (SouthernBiotech, Birmingham, AL) as previously described (28 (link)).
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3

Investigating LPS-induced Oxidative Stress

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Lipopolysaccharide (LPS) was obtained from Thermo Fisher Scientific (No. 00-4976-93). The ROS inducer BAY 87-2243 (BAY) [24 (link)] was obtained from Sigma-Aldrich (SML2384, USA). The C3 level in the culture medium was determined with the Complement C3 Mouse ELISA Kit (Abcam, USA).
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4

Lipopolysaccharide Activation Assay

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Lipopolysaccharide (LPS) was purchased from Thermo Fisher, Waltham, MA, and CLI‐095 from InvivoGen, San Diego, CA, USA. All the other reagents unless otherwise stated were purchased from Sigma‐Aldrich, St Louis, MO, USA.
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5

Lipopolysaccharide-Induced Cell Signaling

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Lipopolysaccharide (LPS) was purchased from Thermo Fisher Scientific, Waltham, USA. LiCl was purchased from Sigma-Aldrich (St. Louis, MO, USA). Ebselen was purchased from Tokyo Chemical Industry, Japan. Antibodies against myosin heavy chain 2 (MyHC; catalog number sc-53095) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA), while Phospho (Ser-9) and naïve GSK3β (#9336 and #9315) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Alpha-tubulin (PA5-29444) antibody was purchased from Invitrogen (Waltham, MA, USA).
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6

Cytotoxicity Screening of Compounds

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Mitochondrial activity as a measure of cell viability was performed by MTT assay in 96-well cell culture microplates using RPMI 2650 cells (human nasal septum epithelial squamous carcinoma cells, obtained from American Type Culture Collection, ATCC, Manassas, VA, USA). RPMI 2650 cells were seeded at a density of 4 × 104 cells/well. First, serial dilution was made of the following stock concentrations: 4.11 mg/mL HPβCD_MEL-P_PVA_spd or 2.99 mg/mL αCD_MEL-P_PVA_spd or 5 µg/mL Lipopolysaccharide (LPS; ThermoFisher Scientific, Waltham, MA, USA), then the cells were incubated at 37 °C for 24 h. Later, 20 μL of thiazolyl blue tetrazolium bromide (MTT; Sigma-Aldrich, St. Louis, MO, USA) was added to each well. After an additional incubation at 37 °C for 4 h, sodium dodecyl sulfate (Sigma-Aldrich, St. Louis, MO, USA) solution (10% in 0.01 M HCI) was added and were incubated overnight. Cytotoxicity of the compounds was then determined by measuring the OD at 550 nm (ref. 630 nm) with EZ READ 400 ELISA reader (Biochrom, Cambridge, UK). The assay was repeated four times for each concentration.
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7

Curcumin's Anti-inflammatory Potential

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Acetone (Sigma Aldrich, SA), Ampicillin (Sigma Aldrich, SA), nutrient broth (Oxiod), Curcumin (Adcock-Ingram), Dichloro-dihydro-fluorescein diacetate (H2DCF-DA) (ThermoFisher Scientific), Lipopolysaccharide (LPS) (ThermoFisher Scientific), RPMI-1640 medium (Whitehead Scientific), Phosphate Buffered Saline (PBS) (White Scientific), foetal bovine serum (FBS) (Hyclone, Thermo Scientific), Minimum Essential Medium (MEM, Whitehead Scientific) gentamicin (Virbac) 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT) (Sigma Aldrich, SA), foetal calf serum (Highveld Biological).
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8

Synthesis of Fluorescent Nanoparticles for Immunoassays

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All synthesis procedures were conducted using ultrapure water obtained from a Milli-Q system (Millipore Corporation, Billerica, MA) with resistivity of 18.2 MΩ·cm. Potassium hexacyanoferrate (II) trihydrate (MW 422.39; K4[Fe(CN)6]·3H2O), iron (III) chloride hexahydrate (MW 270.3; Fe(Cl)3·6H2O), and citric acid were purchased from Sigma-Aldrich (St. Louis, MO, USA), and were used as supplied. Acetone, ethanol, and ethidium bromide (EtBr) solution were obtained from Sigma-Aldrich. Poly(ethylenimine) (PEI, Mw 2,000, Mn 1,800, 50% w/v in H2O) was purchased from Sigma-Aldrich, and diluted in acetate buffer (pH 5.2, Sigma-Aldrich). Murine CpG oligodeoxynucleotide (CpG) TLR9 ligand (ODN 1585; Class A)) was purchased from InVivoGen (San Diego, CA, USA). Fluorescent antibodies against HMGB1 and calreticulin were purchased from Abcam (Cambridge, UK). Lipopolysaccharide (LPS) was purchased from Thermo Fisher Scientific (Carlsbad, CA, USA).
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9

Comprehensive Analytical Workflow for Plasma Characterization

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Deionized water, methanol (99.9%, LC/MS Grade), Gibco F12-K medium, Gibco DMEM medium, Gibco 0.25% Trypsin-EDTA, Gibco penicillin-streptomycin (P/S), phosphate-buffered saline (PBS), CellMask™ plasma membrane stain (green), LIVE/DEAD™ fixable green dead cell stain kit, and lipopolysaccharide (LPS) were obtained from Thermo Fisher Scientific (Waltham, MA). 1 N NaOH, 1 N HCl, 5 N ammonium hydroxide, glacial acetic acid (99.99%), ultra-high purity ammonium acetate (99.999%), trypan blue, and total human serum IgM and human serum IgG isolates (purity ≥95%, based on non-reduced SDS-PAGE and verified by nanoLC-MS/MS of tryptic digests) were purchased from Sigma-Aldrich (St. Louis, MO). PNGase F enzyme was from New England Biolabs (Ipswich, MA). Fetal bovine serum (FBS) was purchased from R&D Systems (Minneapolis, MN). Platelet-free anticoagulated with EDTA pooled total human plasma (from blood donated by self-declared healthy male donors of 23–67 years old) was kindly provided by Prof. Ghiran’s laboratory (BIDMC, Boston, MA). No protein depletion or enrichment was done prior to the analysis of total plasma samples in this study. All bare fused silica (BFS) capillaries (91 cm × 30 µm i.d. × 150 µm o.d.) with sheathless CESI-MS emitters in OptiMS™ cartridges were from SCIEX (Redwood City, CA). Aquapel® was purchased at Pittsburgh Glass Works (Pittsburgh, PA).
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10

Isolation of Murine Bone Marrow Neutrophils

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Bone marrow–derived neutrophils were isolated from C57BL/6 mice (7 wk old, males, n = 6) as previously described (62 (link), 63 (link)). Briefly, mice were euthanized according to the approved procedure by the Hebrew University of Jerusalem Institutional Animal Care and Use Committee (IACUC). Euthanized mice were disinfected and dissected to isolate the femur. Muscles on the femur were gently removed with scalpel and scissors while avoiding damage to the head of the femur. The bones were rinsed in 70% ethanol and washed with cold Dulbecco’s phosphate-buffered saline (Biological Industries). The epiphyses of the long bones were cut, and bone marrow cells were isolated by scraping the inner lining of the shaft and then flushing the shaft with PBS using a 25-gauge needle into a 50-mL tube fitted with a 100-μm filter. Bone marrow cells were pelleted by centrifuging at 1,500 rpm for 5 min (Eppendorf centrifuge R5810). Red blood cells were lysed by resuspending the cell pellet in 1 mL of red blood cell lysis solution (150 mM NH4Cl, 10 mM NH4HCO3, and 2 nM EDTA) for 5 min at room temperature and then neutralized with 9 mL PBS. Cells were centrifuged and resuspended in RPMI-1640 (Sigma) supplemented with 10% FBS. The yield was determined by counting the cells with a hemocytometer. Lipopolysaccharide (LPS; 2 µg/mL, Thermo Scientific) was added to activate the bone marrow neutrophils.
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