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EIF4G1 is a protein involved in the regulation of mRNA translation initiation. It is a subunit of the eukaryotic translation initiation factor 4F (eIF4F) complex, which plays a crucial role in the recruitment of the ribosome to the mRNA template. EIF4G1 functions as a scaffold protein, interacting with other components of the translation initiation machinery to facilitate the assembly of the translation pre-initiation complex.

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8 protocols using eif4g1

1

Antibody Resource for Cell Signaling

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The following antibodies were obtained from Cell Signaling Technology: Mono-Methyl Arginine (R*GG; D5A12; #8711), Mono-Methyl Arginine (Me-R4-100; #8015), eIF4G1 (#2858), eIF4G1 (D6A6; #8701), eIF4E (C46H6; #2067), Phospho-eIF4E (Ser209; #9741), eIF4A (C32B4; #2013), eIF2alpha (D7D3; #5324), phospho-eIF2alpha (Ser51; #3398), PABP1 (#4992), GAPDH (14C10; #2118), HA-Tag (6E2; HRP Conjugate), mouse anti-rabbit IgG conformation specific (#5127), and rabbit IgG isotype control (#3900). We purchased Prmt1 antibodies from Millipore (#07-404) and Abcam (ab73246 and ab7027). p53 (#554147) and p21 (sc-6246) antibody were purchased from BD Pharmingen and Sana Cruz Biotechnology, Inc., respectively. Anti-GFP (ab6556) was obtained from Abcam. Anti-FLAG M2 antibody (F1804), Anti-FLAG M2 affinity gel (A2220), doxycycline (D9891) and 4-hydroxytamoxifen (H7904) were purchased from Sigma. We obtained cycloheximide (#239763) and G418 from Calbiochem and Corning, respectively.
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2

Western Blot Analysis of Protein Phosphorylation

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Cells were rinsed with PBS and lysed as previously described (8 (link)). Protein concentration was determined using Coomassie Plus Protein Assay Reagent (Thermo Scientific). Equal amounts of cell lysate proteins (50 μg) were separated on SDS-PAGE and transferred to polyvinylidene difluoride membranes (PerkinElmer Life Sciences). Membranes were blocked (5% BSA/TBST, 1 h) and incubated with primary antibodies (1 h at room temperate or overnight at 4°C), with shaking. Following three TBST washes, membranes were incubated for 1 h at room temperature secondary antibodies (1:10,000). Detection and quantifications were made using Odyssey Infrared Imaging System (LiCor Biosciences), or by exposing them to X-ray film. Antibodies against p-AKT, p-PRAS40, p-IKK, p-IκB, p-TSC, p-mTOR, p-p70S6K, p-RPS6, p-4E-BP1, pSGK3, AKT, PRAS40, IKK, IκB, mTOR, p70S6K, RPS6, 4E-BP1, GSK3, eIF4G1, and eIF4E were purchased from Cell Signaling Technology. Antibodies against β-actin and α-tubulin were obtained from Santa Cruz Biotechnology. Secondary antibodies were goat anti-rabbit Alexa-680 F(ab')2 (Molecular Probes) and goat anti-mouse IRDye 800 F(ab')2 (Rockland Immunochemicals). All antibodies were used according to the suppliers' recommendations.
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3

Western Blot Analysis of Cell Lysates

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Total cell lysates (20μg) were resolved by 10% SDS–PAGE, transferred to nitrocellulose membranes, and immunoblotted with antibodies for EIF4G1 (Cell Signaling), p21, CyclinD1, USP10 (Abcam) and β-Actin (Sigma) for loading controls. Immunoreactive bands were identified using an enhanced chemiluminescence reaction (Perkin-Elmer), and visualized by autoradiography.
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4

Protein Expression Analysis in DSF+Cu Treated Cells

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Cell lysates were harvested after treatment with DSF ± Cu for 24 h. Membranes were incubated with primary antibodies against XIAP, SOD2 (BD Bioscience), SOD1, PARP, eIF4G1, p38, ERK1/2 (p44/42 MAPK), NFκB (p65 subunit) (Cell Signaling Technologies), Ctr1 (Nose et al., 2006 (link)), actin, or GAPDH (Santa Cruz Biotechnology Inc.) overnight at 4°C as described previously (Aird et al., 2008 (link)). Additional information about antibodies used in this study is provided in Supplementary Table 1. Stripping of membranes to detect total protein was done as previously (Aird et al., 2010 (link)). Densitometric analysis was conducted using NIH ImageJ software (Abramoff, 2004 ).
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5

Proximity Ligation Assay for eIF4G1-eIF4E Interaction

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We performed PLA as described before.26 (link) Briefly: 2×10e6 cells were treated for 4 h as indicated. Cells were washed with 1× phosphate buffered saline (PBS) (Corning, NY) and fixed with 4% paraformaldehyde (Thermo Fisher Scientific). CometSlides (Trevigen, Gaithersburg, MD) were coated with Poly-L-Lysine 0.1% solution (Sigma–Aldrich (SA), St. Louis, MO), and cells were allowed to adhere. We followed the protocol of Duolink PLA;27 (link) briefly: Cells were blocked using Duolink blocking solution, followed by probing with primary antibodies for eIF4G1 (Cell signaling Technologies, Danvers, MA, Cat. #2858, 1:200 dilution) and eIF4E (BD Biosciences, San Diego, CA, Cat. #610269, 2.5 µg/ml final). Next, cells were incubated with Duolink In Situ PLA Probe Anti-Rabbit PLUS (Cat. # DUO92002) and Duolink In Situ PLA Probe Anti-Mouse (Cat. # DUO92004) and allowed to ligate using ligation mix. Next, amplification and washes were performed as instructed and the slides were mounted using media containing DAPI. Slides were imaged using Leica TCS SP8 confocal microscope. Signal obtained was quantified using ImageJ software, and normalised to the number of cells per field (using DAPI nuclei staining). Images shown indicate the signal (Orange DuolinkTM) and nuclei for each field imaged, while graphs presented indicate ratio values of signal per cell in each field imaged.
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6

Immunoblot Analysis of Signaling Pathways

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Antibodies against p-ULK1(S757), ULK1, p-4EBP1(S65)/(T37), 4EBP1, p-S6K(T389), S6K, p-eIF4E(S209), eIF4E, p-S6(SS240/4), S6, DEPTOR, p-AKT(S473)/(T308), AKT, MNK1, p-MNK1(TT197/202), mTOR, Raptor, p-PRAS40(T246), PRAS40, p-ERK1/2(T202/Y204), ERK1/2, GβL, eIF4G1, DDB1, ATM, HSP90, βTRC, Cul4A, RBX1, DDB2, Rictor, Sin1 (Cell Signaling Technologies); tubulin, HA-tag, Flag-tag (Sigma-Aldrich); TELO2 (Proteintech); TTI1 (Santa-Cruz Biotechnology); DCAF6, WDR26, eIF3f (Bethyl Labs); and Cul4B (Genetex). Immunoblots were performed as previously described (Dobrikov et al., 2011 (link)). Immunoblot signals were obtained on and quantified using the Li-COR Odyssey FC2 imaging system and Image Studio software. IL-2 (R&D systems) and IFN-γ (Invitrogen) ELISAs were performed using the manufacturer’s instructions.
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7

Immunoblotting Protein Detection Protocol

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For immunoblotting, cells were lysed in modified radioimmunoprecipitation assay (RIPA) buffer [50 mM tris (pH 7.5), 150 mM NaCl, 1% NP-40, 0.25% sodium deoxycholate, and 1 mM EDTA] with phosphatase inhibitor (Sigma) and protease inhibitors (Millipore) for 30 min in ice followed by centrifugation. Protein concentrations were determined with the Bio-Rad Protein Assay (Bio-Rad). Proteins were separated on precast Novex 10% Tris-Glycine gel/NuPAGE 4-12% Bis-Tris gel at 100 to 160 V using the Mini Gel Tank (Invitrogen) and were blotted onto PVDF membrane at 20 V for 90 min. The following antibodies were used: N-Myc (D1V2A) rabbit monoclonal antibody (Cell Signaling Technology, #84406), c-MYC (Cell Signaling Technology, #18583), CBFβ (Cell Signaling Technology, #62184), eIF4G1 (Cell Signaling Technology, #2858), cleaved caspase-3 (Asp175) antibody (Cell Signaling Technology, #9661), cleaved PARP (Asp214) (D64E10) antibody (Cell Signaling Technology, #5625), and β-actin (13E5) rabbit monoclonal antibody–horseradish peroxidase (HRP) conjugate (Cell Signaling Technology, #5125S).
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8

Western Blot Analysis of HeLa Cell Proteins

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HeLa cell protein was isolated using 1X PBS lysis buffer (1X PBS, 0.5 mM EDTA, Triton X-100, and protease inhibitor mixture) and mixed with sample buffer. The protein was separated on a 10% SDS-PAGE system and then carried to nitrocellulose membranes. The membranes were probed with the anti-CVB3 VP1 antibody (ThermoFisher Scientific, Cambridge, MA, USA), eIF4G1, BAX, BAD, phosphor ERK, total ERK, cleaved caspase3, and GAPDH antibodies (Cell Signaling, Danvers, MA, USA) and refrigerated for 18 h at 4 °C. Antibody binding was detected using the ECL system (Intron Biotech, Inc., Seongnam-si, Republic of Korea) and the results were quantified using NIH-ImageJ1.45s software (Wayne Rasband, MA, USA).
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